Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq28584 105 8e-18 seq672037 89.7 6e-13 >seq28584 Length=21043 Score = 105 bits (116), Expect = 8e-18 Identities = 174/244 (71%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 192433 CTATGGTTAAACAAGCCATTGG-GTTTATTCC-----TTGCCACAACTTAAAAACGGAAA 192486 |||||| |||||||||||| || |||||| | || ||| | | | ||| | Sbjct 16903 CTATGGGTAAACAAGCCATGGGAGTTTATATCACAAATTTCCATG---TTAGGATGGATA 16959 Query 192487 CAGTCTCTCATACATTAAATTATCCACAAAAACCACTTGTTACCACA-GATAT-TGCAAA 192544 || | ||||| || ||||||| || ||||| || ||||| ||| ||| | || || Sbjct 16960 CACTGGCTCATGTTTTGTATTATCCTCATAAACCTCTAGTTACAACAAGATCTATGGAAT 17019 Query 192545 ATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTA 192604 | ||| ||||| ||| ||| || ||||| ||||||||||||| ||| || Sbjct 17020 ACTTACGTT-TTAGAGAATTG-CCAGCAGGAATTAACTCTATTGTTGCTATTCTTTGTTA 17077 Query 192605 TACTGGCTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATT 192664 |||||| |||||||||||||||||| ||||||| ||| | || || | || |||||||| Sbjct 17078 TACTGGTTATAACCAAGAAGACAGTGTTATTTTGAATGCATCTGCTGTAGAGAGAGGATT 17137 Query 192665 ATTT 192668 ||| Sbjct 17138 TTTT 17141 >seq672037 Length=2223 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 50306 AAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 50365 ||||||| | | ||||| |||| ||| |||| ||| | |||||||| ||||| ||| Sbjct 1855 AAAGACATCTAAGAGATGATGATCTTGTGATATTTAATCGTCAACCAACTCTTCACAAAA 1796 Query 50366 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAG 50425 |||| | || |||||| | | || ||||||| |||||| | Sbjct 1795 TGAGTATGATGGGCCATAGAGTTAAGGTACTTCCTTGGTCAACATTTCGTATGAATCTGA 1736 Query 50426 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 50485 | || | |||| ||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1735 GTTGCACATCACCATACAATGCTGATTTTGATGGTGATGAAATGAATTTGCATGTTCCTC 1676 Query 50486 AATCATATGGA 50496 ||||| ||||| Sbjct 1675 AATCA-ATGGA 1666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 623244364807680