Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq671773 235 4e-56 seq113040 224 7e-53 seq12997 149 5e-30 seq50735 129 4e-24 >seq671773 Length=2048 Score = 235 bits (260), Expect = 4e-56 Identities = 755/1152 (66%), Gaps = 26/1152 (2%) Strand=Plus/Minus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 || ||||| || || || || ||||| || || || || ||| | || ||||| Sbjct 1562 TTGGTAATGGTGATCTTGTTCTCCTTGTTGGTGGACTTCTCGATGGCGGAAACGTTAAGG 1503 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 |||||||||||||| | || || ||||| ||||||||||| || || | | || ||| Sbjct 1502 ATACCATTGGCATCGATGTCGAAGGTGACCTCAATTTGAGGTACACCGCGTGGTGCCGGT 1443 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || || | |||| | || || || |||||||| || | || ||| Sbjct 1442 GGGATACCGGTCAGCTCAAATTTACCGAGCAAGTTGTTATCTTTGGTCATAGCACGCTCA 1383 Query 281561 CCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||||| || | |||||| |||| || | | ||||||||| || || || || ||| ||| Sbjct 1382 CCCTCAAATACTTGGATGAGTA-CTCCGGGTTGATTATCGGAGTAGGTGGTGAATG-TCT 1325 Query 281620 GGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 | | | |||| || || || ||||| | | || | ||||||| | ||| |||| Sbjct 1324 GAGTCTGTTTAGTTGGGATGGTAGTGTTACGCTTGATGAGTGTGGTCATGACACCTCCAG 1265 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 | || || | ||| || || || || || ||||||| | | | || || | | | Sbjct 1264 CAGTCTCAATACCGAGGGATAGGGGTGTTACATCAAGCAACAGCAGATCCTGCACCTCCT 1205 Query 281739 CATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 || | | ||| ||||| |||| || || | ||| |||||||| || || || || Sbjct 1204 CAGACTTGTCACCGTGCAAGA-TAGCAGCCTGGACAGCTGCACCATAAGCTACGGCCTCG 1146 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 281857 ||||| |||| || || || || | || |||||||| |||| | || || | ||| Sbjct 1145 TCAGGGTTAATAGATTTGTTGAGCTCCTTTCCATTGAAGAAATCTTGCAGGAGCT-TCTG 1087 Query 281858 -ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 ||||| || ||||||| || || || || | |||||| || || | || | ||||| Sbjct 1086 CACCTTGGGGATACGAGTGGAGCCACCCACCAGTACAATATCGTGGATTTGAGCCTTATC 1027 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 || || | ||| || || || || || || | || || |||| || | Sbjct 1026 CATCTTAGCATCACGTAGTGACTTCTCCACTGGCTCCATGGTAGACCTGAACAGATCAGC 967 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACA 282035 || || ||||| ||| | ||| | || | || || ||||| || ||||| | Sbjct 966 GTTCAGCTCCTCGAAGCGAGCACGAGTGATAGA-AGTGTAGAAGTCAATACCCTCGAAGA 908 Query 282036 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 282095 |||||| | ||||| | | ||| || || || || | | | || || | |||| Sbjct 907 GAGAATCTATCTCAATGCTCGCTTGTGTGGACGACGACAAGGTCCTCTTTGCCCTCTCAC 848 Query 282096 ATGCTGTCCTTAGTCTTCGTAAGG---CTTTTGCTGATTGATTCAAATCTGTTTTATATT 282152 |||| || | | | | |||| || ||| || | | | || |||| |||| Sbjct 847 ATGCAGTACGCAAACGCC-TAAGAGCTCTCTTGTTGGTAGCG--AGGTCCTTTTTGTATT 791 Query 282153 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 282212 | |||||||| || | ||| | | || | ||||| ||||| || |||||||||| Sbjct 790 TCCTCTTGAACTCCTGGACAAAGTGATTGACCATGCGATTGTCAAAGTCCTCACCTCCCA 731 Query 282213 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 282272 | | || | || | || | | | || | ||| | ||||| || | | | | | Sbjct 730 AGTGGGTGTCGCCAGCGGTGGATTTCACCTCGAAGATACCATCCTCGATGGTAAGGATGG 671 Query 282273 TAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG- 282331 || || ||| || || || | ||||| ||||||||||| || || || | Sbjct 670 ACACGTCGAAGGTACCGCCGCCGAGGTCAAAGATAAGTACATT----TCGTTCTCCAGTA 615 Query 282332 ---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 ||||| |||||||| || |||| ||||||||||| |||||||| || |||| | | Sbjct 614 CCCTTTTTGTCAAGACCGTAAGCAATCGCAGCAGCAGTCGGTTCATTGATGATTCGGAGA 555 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 || || | |||| || | ||||||||||| |||||||||||||| || || || || Sbjct 554 ACGTTCAAGCCAGAGATGGTACCTGCATCTTTTGTGGCTTGTCTTTGAGAGTCATTGAAG 495 Query 282449 TATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGT 282507 || || ||||| || || || ||| |||| || ||| || | ||| || || || Sbjct 494 TACGCTGGAACCGTGATGACTGCATTCTG-CACAGTTTTGCCGAGATAGGCTTCGGCAGT 436 Query 282508 TTGTTTCATTTT 282519 || |||||||| Sbjct 435 TTCCTTCATTTT 424 >seq113040 Length=3902 Score = 224 bits (248), Expect = 7e-53 Identities = 825/1260 (65%), Gaps = 58/1260 (5%) Strand=Plus/Plus Query 281612 AATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 |||| |||| ||||| ||| ||||| ||||| | | ||| | |||||||| | Sbjct 2500 AATA-TCTGAGATTTCTTAGTTGGAATGACAGTGTTACGAGGAATGAGTTTGGTCATCAC 2558 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 |||||| | ||||| | ||| | || || ||| ||||||||| | ||||||| | Sbjct 2559 TCCACCAACAGTTTCAATACCCATAGTCAGCGGATTGACATCAAGCAAGACAATAGCATC 2618 Query 281731 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790 | || ||| || ||| || | | | || || | |||||||||||||||||| Sbjct 2619 A-GT-----ATCTTGTTCACCGCTGAGTACACCAGCCTGCACAGCAGCACCATATGCAAC 2672 Query 281791 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT--TTGAAAGA 281848 ||| |||||||| |||| | | | ||| ||||| ||||| || | |||| Sbjct 2673 AGCCTCATCAGGGTTAATTCCTCGAGATGGTTCCTTACCGTTGAAGAATTCCTTGACC-- 2730 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 |||||| |||||||| ||||| | || ||||| ||||| |||||||||| || | Sbjct 2731 AGTTGTTGAACCTTAGGGATACGGGTAGAACCTCCTACTAAGACAATTTCATCAACATCC 2790 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 || | || | | || ||| ||||| | || |||| | | | ||| || Sbjct 2791 TTCTTGTTCATGTCAGCGTCTTCTAATACTTTCTGCACAGGTTTCAAAGTGGATCTGAAG 2850 Query 281969 AAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTC 282026 | ||| || ||| |||||| ||||||||||| || || || || | ||| | Sbjct 2851 AGGTCCATGTTCAA--TTCTTCAAATTTAGCTCTGGTGAGCGTTTCAGAGAAGTCATCAC 2908 Query 282027 CTTCGAACAAAGAATCAACTTCAATCGT-AGTTTGAGTCGAAGAAGATAGTGCACGTTTA 282085 |||| || || || |||| ||||||| | | | | | | || || || || | || Sbjct 2909 CTTCAAAGAATGATTCAATTTCAATCTTGACCTGGTGACTG-GATGACAGGGCTCTCTTT 2967 Query 282086 GCACGTTC-ACATGCTGTCCTTAGTCTTC-GTAAGGCTT--TTG-CTGAT-TGATTCAAA 282139 || ||| || | | | | |||| | | ||| ||| || | |||| | Sbjct 2968 GCCTTTTCTACCTCACGACGCAA--CTTCTGGACGGCGCGGTTGTCTTTTCTGAT----A 3021 Query 282140 TCTGTTTTATATTTTCT-CTTGAA-ATCTTCAACACACCATGTTACAAGACGATTA--TC 282195 || || | | |||| |||| | | ||| | | |||| || ||| | || Sbjct 3022 TCC-TTGCCTTTCTTCTTCTTGTACAGCTTGATGAAG---TGTTCCATGACTCTCTGGTC 3077 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||| |||||||||||||| | |||| || || || |||| || | |||| Sbjct 3078 AAAGTCTTCACCTCCCAAGTGGGTATCACCATTGGTTGCGACAACTTCAAACACACCATT 3137 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 |||| | | |||| |||||| |||||||||||||| |||||| | || ||||| Sbjct 3138 GTCAATGGTTAGCAGAGATACATCAAAGGTTCCACCACCCAAATCAAAGACCAGAACATT 3197 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 | | ||| ||| || || ||||| ||||| || | |||||| || || || ||||| Sbjct 3198 CTTCTCTC---CTTCCTTCTTGTCAAGGCCATAGGCTATAGCAGCTGCGGTAGGCTCATT 3254 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 |||||||||| ||||||||||||| |||| | || |||||||| || ||||| | ||| Sbjct 3255 GATAATTCTCATTACATTAAGACCAGAAATTGTACCAGCATCTTTGGTTGCTTGACGTTG 3314 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 | ||| || || || || || ||||||| ||| || | || || | ||| |||| || Sbjct 3315 AGCATCATTGAAGTAAGCTGGCACAGTAACAACAGCGTGAGTAACCTTTTTGCCAAGGTA 3374 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 ||| || || | ||||||||| | | || ||| | || |||| ||| |||| | | Sbjct 3375 AGCCTCAGCAGTCTCCTTCATTTTAGTCAGAACCATAGCAGAGATTTCTTCAGGAGCA-A 3433 Query 282556 TTGCTTGGATTCATTTTG-ATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 ||| | | || || | | ||||| || || |||||| | | ||| | Sbjct 3434 ACACTTTGTCACCTTGTGAAGTTTCTACTTGAACATGTGGTTTGCTGTTCTTCTCAATGA 3493 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | || || || | | || | ||| ||| ||| |||||||| | | || | ||||| Sbjct 3494 CCTTGAAAGGGAAGAACTTAACATCATGTTGTACAGTTTGGTCACTCCATTCCCGACCAA 3553 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATT-----GGTTGG-ATTAACTGCAGCTTGATATT 282728 | | ||||| |||||||| | |||||| |||||| | ||| || || | | Sbjct 3554 TCAGACGTTTGGCATCAAAGACAGTATTTTCAGGGTTGGTAGTAA--GC----TGGTTCT 3607 Query 282729 TGGCTGCATCTCCAATCAGATGTT--CTGTC-TCTGTAAATGAAACATATGATGGAGTTG 282785 | || ||||| ||||||| | ||| | ||| | || || | || ||||| || || Sbjct 3608 TAGCAGCATCACCAATCAAACGTTCACCGTCTTGAGTGAAGGCCACGTATGAAGGGGTAA 3667 Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 | || || || || ||||| ||||| ||||| || ||||||| | ||||| |||| Sbjct 3668 TACGGTTTCCCTGGTCATTGGCAATGATTTCTACACGTCCATTTTTGTAGACACCAACAC 3727 >seq12997 Length=12917 Score = 149 bits (164), Expect = 5e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 637115 AGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATT 637174 ||||| ||||||| || | ||| || |||||||||||||||||||||||| |||| |||| Sbjct 9040 AGAAAGTTATTGTAGACTTTTCATCACCAAATATTGCTAAAGAAATGCATGTTGGCCATT 8981 Query 637175 TAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATG 637234 |||||||||| || |||||||| ||||||||| || |||||| | | | |||| Sbjct 8980 TAAGATCAACCATCATTGGTGACAGTATTTGTAGAGTGTTAGAATTTTTAAATAATGATG 8921 Query 637235 TTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATA 637294 || | | | || ||| ||||||| ||||| ||||| || || ||||| |||||| || Sbjct 8920 TTGTTAGATTGAACCATTTGGGTGACTGGGGTACTCAGTTTGGAATGTTGATTGCTCATT 8861 Query 637295 TTAAAAATAA 637304 | || |||| Sbjct 8860 TGCAAGATAA 8851 >seq50735 Length=811 Score = 129 bits (142), Expect = 4e-24 Identities = 402/613 (66%), Gaps = 16/613 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG--GT 282332 ||||| |||||| || |||| ||| || ||||| ||||| | ||| |||| || Sbjct 643 ACATCGAAGGTTCCTCCTCCCAGATCGAAGATAAGAACATT--TCTCTCGCCCTTGAGGT 586 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 | ||||| ||||| ||||| | ||| ||||| || || || || || || | | || | Sbjct 585 TCTTATCGAGACCGTACGCGAGAGCGGCAGCTGTAGGCTCGTTGATGATGCGGAGCACGT 526 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | ||||| || || || || || || ||||| || | || || ||||| || |||| Sbjct 525 TCAGACCGGCGATAGCCCCCGCGTCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTATG 466 Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTTG 282510 | ||||| || | || || || ||| |||| | ||| ||||| || | | Sbjct 465 CCGGAACTGTGACTACCGCGTCCCCCACTGTACTTCCTAGATA--CGCTTCCGCAATCTC 408 Query 282511 TTTCATTTTACTTAAAATCAT--TGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCA 282568 |||||||| | | | ||| || ||| ||| |||||| | || |||| | || Sbjct 407 CTTCATTTTGGTCAGCACCATGCTGCTGA--TTTCTTCTGGCGCGAATCGCTTCGTCTCG 350 Query 282569 T-TTTGATAT-GATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 282626 ||||| | ||| | | | ||||| | | | || ||||| || |||| Sbjct 349 CCTTTGAACTCGATCTGT--ATTTTCGGTTTGCCGCAGTCGCTGATCACTTTGAAGGGCC 292 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 ||| | |||||| |||| | |||||| ||| | || || || | | ||| | Sbjct 291 AATGCTCCATATCCTGCTGAATCTTGGGGTCATCAAATTTCCTCCCGATCAGCCTTTTCG 232 Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 | ||||| | || ||| | || || | || | || | |||||||| || || || | Sbjct 231 CGTCAAACACGGTGTTGTTAGGGTTCAAGGCGACCTGGTTCTTGGCTGCGTCGCCGATGA 172 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 || | || || || || || | || || ||||| || || || || || || || |||| Sbjct 171 GACGCTCCGTGTCCGTGAACGCCACGTACGATGGTGTGGTACGGTTGCCCTGGTCGTTCG 112 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866 | || || || || || |||| |||||||| || ||||| | || |||||||||| Sbjct 111 CGATGATGTCCACGTTTCCATGCTGCCATACTCCAACACACGAGTATGTGGTTCCTAAAT 52 Query 282867 CAATACCAATAGC 282879 |||| || ||||| Sbjct 51 CAATTCCGATAGC 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3707593215430338