Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq26808 181 2e-40 seq608441 167 5e-36 seq10425 91.5 3e-13 seq219547 86.0 1e-11 >seq26808 Length=8541 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | || |||||| || || || ||||||||||| |||||||| || | Sbjct 7610 TACCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTCTG 7551 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||||| |||||| || |||||||| || | |||||| ||||| | Sbjct 7550 AAAGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTGGCG 7491 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || ||||| |||||||| || || || || ||| | Sbjct 7490 GAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCA 7431 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||| || || | || || || |||||||||||| Sbjct 7430 CCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATT 7381 >seq608441 Length=509 Score = 167 bits (184), Expect = 5e-36 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 82609 GCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTT 82668 ||||||| ||||||||||| || || ||||| |||| | | |||||||| ||||||| Sbjct 509 GCAGAGTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTT 450 Query 82669 TTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTG 82728 | ||||| || || |||| || ||||||||||| || || || || |||||||| |||| Sbjct 449 TCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTG 390 Query 82729 CTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCA 82788 ||||||||||||| || |||||| | ||| ||||| || ||||| || || || || | Sbjct 389 CTTTTACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGA 330 Query 82789 ACGTCTTTACAAATATCTGCAT 82810 || || ||||| |||||||| Sbjct 329 GAGTTTTAACAAAAATCTGCAT 308 >seq10425 Length=666 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || ||||||| ||||| ||||| || || ||||||||||||||||| ||||| || || Sbjct 456 CTCTGTTGATTGGGAGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCTCGATG 397 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 ||||| || || || || | || || |||||||| || | |||||||| || || Sbjct 396 GTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTTACGAAAATT 337 Query 82806 TGCAT 82810 ||||| Sbjct 336 TGCAT 332 >seq219547 Length=1641 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || ||||||| ||||| ||||| || || ||||||||||| ||||| ||||| || || Sbjct 1198 CTCTGTTGATTGGGAGGGATTCCCTCTTTGTCTTGAATCTTAGCTTTCACATTCTCGATG 1257 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 ||||| || || || || | || || |||||||| || | |||||||| || || Sbjct 1258 GTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTTACGAAAATT 1317 Query 82806 TGCAT 82810 ||||| Sbjct 1318 TGCAT 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 973362182577507