Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq51755 206 3e-48 seq617918 116 4e-21 seq255931 102 8e-17 seq608441 95.1 1e-14 >seq51755 Length=2487 Score = 206 bits (228), Expect = 3e-48 Identities = 353/505 (70%), Gaps = 14/505 (3%) Strand=Plus/Plus Query 24794 GTGGCGGCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTG 24853 |||| || ||||| ||||| ||||| ||||| || | |||| ||||| ||| | Sbjct 988 GTGGGCGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGACCGCATC 1047 Query 24854 CCCGCGCCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGC 24913 || | || ||||| | || ||||| |||||||| | || || || || || | ||| Sbjct 1048 CCGGTTCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGTGATGGC 1107 Query 24914 ATCAACGA---TGCGCTAAAAACTGTGCCGGGCAGCTTCGAGGCGCTGCAACGATCGTGC 24970 ||||| || | | | ||| || ||||| || | || |||| || || ||| Sbjct 1108 ATCAATGACAGTTTGAAAGAAATTGAA---GGCAGTTTTCAAGCATTGCAGCGTTCATGC 1164 Query 24971 GCCGGCCGCGCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCG 25030 |||||| | ||||||||||| | ||||||||||| ||||||||| | ||||| || Sbjct 1165 AGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAGCCT 1224 Query 25031 CAGAAAGGCGTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCG 25090 || || || | || | ||||||||||| ||||| || ||||| || ||||||||| | Sbjct 1225 CAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAG 1284 Query 25091 CTGAAGC--GCGCCTACCCGCACCTCAAAG-TGCTGCCCTCGATCGGCGGCTGGACGCTG 25147 |||| | ||| ||| | | |||| | | || ||||| || |||||||| || Sbjct 1285 TTGAAACAAGCGAATACTGG---TTTAAAGATCTTACCTTCGATTGGTGGCTGGACATTG 1341 Query 25148 TCCGACCCGTTCTTCCACATGCACGACAAGGCGGCGCGCCAGACGTTT-ATCGACTCGGT 25206 |||| || |||||| | | ||| || | ||| | ||||| | | ||| || Sbjct 1342 GCCGATCCCTTCTTCTTCTTCACCGATAAAACCAAGCGTGA-CCGTTTCGTTGGCTCCGT 1400 Query 25207 GCAAGAGTACCTCGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCC 25266 | |||| | |||| |||||||||||||| || || ||||| | ||||||||||| || Sbjct 1401 GAAAGACTTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTCCC 1460 Query 25267 CGGCGGCAAGGGCGCCAACCCGGAC 25291 |||||||| ||||| ||||| ||| Sbjct 1461 TGGCGGCAAAGGCGCTAACCCTGAC 1485 >seq617918 Length=543 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 50027 ACAAACGGACACTGCGGCGCCCAGCGCGCGTGGTCGGTGGCCACGTCGTCGCCCTCCATC 50086 ||||| |||||||| || ||||| | | ||||||| || |||||||||||| | | Sbjct 475 ACAAAGGGACACTGGGGGGCCCACCTCCGATGGTCGGCAGCAGGGTCGTCGCCCTCGACC 416 Query 50087 CACCGCATGATTTCTACCTTGCAGAATGCGCAGCGCACGGTGTCGCCGTTGCCAAAATAG 50146 |||| ||||||||||||||| ||||| || |||| || ||||||| || | ||| Sbjct 415 CACCTCATGATTTCTACCTTACAGAAAGCACAGCAAACCTCGTCGCCGCGACCGAGGTAG 356 Query 50147 TAGAATCCGTTGCGCGCCAGCTGCTCGGG 50175 |||||||||||||| |||| ||||| || Sbjct 355 TAGAATCCGTTGCGGGCCAATTGCTCCGG 327 >seq255931 Length=537 Score = 102 bits (112), Expect = 8e-17 Identities = 170/240 (71%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 25056 AGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTGAAGC--GCGCCTACCCGCACCT 25113 |||| ||||| || ||||| || ||||||||| | |||| | ||| ||| || | Sbjct 1 AGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACAAGCGAATACTGGC---T 57 Query 25114 CAAAGTGCTGCCCT-CGATCGGCGGCTGGACGCTGTCCGACCCGTTCTTCCACATGCACG 25172 |||| || ||| |||| || |||||||| || |||| || |||||| | | || Sbjct 58 TAAAGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTTCTTCTTCTTCACCG 117 Query 25173 ACAAGGCGGCGCGCCAGACGTTTA-TCGACTCGGTGCAAGAGTACCTCGTCACCTGGAAG 25231 | || | ||| | ||||| | | ||| ||| |||| | |||| ||||||||| Sbjct 118 ATAAAACCAAGCGTGAT-CGTTTCGTTGCCTCCGTGAAAGACTTCCTCCAAACCTGGAAG 176 Query 25232 TTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCGGCAAGGGCGCCAACCCGGAC 25291 ||||| || || ||||| | || |||||||| || |||||||| ||||| ||||| ||| Sbjct 177 TTCTTCGATGGTGTCGATATTGACTGGGAGTTCCCTGGCGGCAAAGGCGCTAACCCTGAC 236 >seq608441 Length=509 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || |||||||| || ||||||||| || || ||| ||| || || || || | Sbjct 504 GTCGATTCTTTCTGGATGTTGTAATCGG--ATAATGTACGTCCGTCTTCAAGTTGTTTCC 447 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || |||||||| || ||||| ||||| || ||||| ||| ||||||| Sbjct 446 CAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCT-TGAATTTTTGCT 388 Query 133582 TGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | | | || | || || | || || || || | || | |||||| || || ||| Sbjct 387 TTTACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGA 328 Query 133641 GTTTTTACGAAAATCTGCATGG 133662 ||||| || ||||||||||||| Sbjct 327 GTTTTAACAAAAATCTGCATGG 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479354548240120