Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq237220 273 5e-68 seq672037 105 2e-17 >seq237220 Length=3575 Score = 273 bits (302), Expect = 5e-68 Identities = 545/799 (68%), Gaps = 9/799 (1%) Strand=Plus/Plus Query 110363 TGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAA 110422 |||||| |||||||| ||||| | | || | ||||| |||||||| | |||||| | Sbjct 702 TGAACGACCTCAACATATGTTGATGAGAGTGTCCATTGGAATTCATGGTGAAGATATTGA 761 Query 110423 AGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 || | || | ||| || || | | | || | | |||||| | ||||| Sbjct 762 TGCAGCCATAAATACATATAATTTACTTTCTGAGAAATATTTCACTCATGCCAGCCCTAC 821 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 | |||| ||| | |||| | || | | || || ||||| ||| || || Sbjct 822 CTTATTCTCCGCTGCAACTCCACGCCCTCAGCTATCGTCATGTTTTCTAATAGCTATGAA 881 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAA 110601 |||||| || ||||| ||||| ||| | ||||||| | |||| | || |||||| Sbjct 882 AGATGATAGCATAGAAGGGATTTACGATAC-CTTAAAGCAGTGTGCTTTGATATCTAAAT 940 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 | || ||||||||| | || || || ||| | | ||||| | |||| ||| Sbjct 941 CTGCAGGTGGAATTGGTGTCCATGTCCACTGTATAAGGGCTAAAGGTACTTATATAGCAG 1000 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | | || |||| |||| ||| ||||| ||||||||| |||| | ||| | || || | Sbjct 1001 GAACAAATGGTGTGTCAAATGGTCTTGTACCAATGTTACGAGTTTACAATAATACAGCTA 1060 Query 110722 AATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 |||||| ||||||| ||||| | | ||| | ||||| ||||| | ||||| | Sbjct 1061 GATATGTTGATCAAGGAGGTAATAAGCGCCCTGGTGCTTTTGCAGTCTATTTAGAACCAT 1120 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 ||||| | |||||||||||||||||||| | ||||| ||| |||||| | Sbjct 1121 GGCATGCCGATATATTTGAATTCTTAGATTTAAAGAAAAACACTGGAAAAGAAGAAGTAC 1180 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 | || | || | ||||||||| ||||||| | ||| | ||||||||| | ||| || Sbjct 1181 GTGCCAGGGAACTTTTTTATGCATTGTGGATACCTGATCTTTTCATGAAAAGAGTTGAAA 1240 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA-TGTATAT 110957 | ||||| | ||| | |||||||||||||| || ||||| || |||| ||| | Sbjct 1241 ATGATGGCGTATGGACCCTTATGTGTCCTCACGATTGCCCTGGGTTAGCTGACTGT-TGG 1299 Query 110958 GGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAA 111017 |||||||| |||||| | | || |||| |||||||||||| | ||| |||||| Sbjct 1300 GGAAAAGAATTTGAATCCTTATATGAAACCTATGAAAAAGAAAATAGATTTATTAAACAA 1359 Query 111018 ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCT 111077 | ||| |||| ||||||| ||| | ||| | ||||| || ||||| ||||| Sbjct 1360 GTAAGAGCACAAGTACTTTGGAAAGCAATAATAGAAGCTCAAGTAGAGACTGGTACTCCA 1419 Query 111078 TATATTTTGTATAAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136 || || || | |||||| |||| |||| | ||| |||||| | |||||||| || || Sbjct 1420 TACATGTTATTTAAAGATTCAT-GTAATAGAAAAAGTAATCAGAAAAATTTAGGTACCAT 1478 Query 111137 TAAGTCTAGTAATTTGTGC 111155 ||| | |||||| ||||| Sbjct 1479 TAAATGTAGTAACCTGTGC 1497 >seq672037 Length=2223 Score = 105 bits (116), Expect = 2e-17 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| | || || |||||| |||||||| |||| ||| || ||| | Sbjct 1823 TTTAATCGTCAACCAACTCTTCACAAAATGAGTATGATGGGCCATAGAGTTAAGGTACTT 1764 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGT-GCTTGTACGCCTTATAATGCGGATTTTGA 305454 || | | |||||||| | ||| | ||| || | | || || ||||| |||||||| Sbjct 1763 CCTTGGTCAACATTTCGTATGAATCTGAGTTGCACAT-CACCATACAATGCTGATTTTGA 1705 Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGACTGAA 305506 ||| |||||||||||| ||||||| |||||||||| || |||| | | ||| Sbjct 1704 TGGTGATGAAATGAATTTGCATGTTCCTCAATCAATGGAAACAAGGGCCGAA 1653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176580458678393