Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq26808 129 1e-24 seq608441 107 4e-18 >seq26808 Length=8541 Score = 129 bits (142), Expect = 1e-24 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| |||||| || || || || || || || ||||| |||||| ||| ||| Sbjct 7385 CAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTCCGAC 7444 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| |||||||| || ||||| ||| ||| ||| || Sbjct 7445 ACTATCGAAAATGTCAAAGCTAAA-ATTCAAGACAAGGAAGGTATTCCGCCAGACCAACA 7503 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || ||||| ||||| || || || |||||||| | ||| | | || || || | Sbjct 7504 ACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAATAT 7563 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| || || ||||| | |||||||||||| || Sbjct 7564 CCAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGA 7603 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || |||||||||||| | ||||| || || |||||||||| ||||||||| | | ||| Sbjct 7603 TCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTCTGAAAGAGT 7544 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||| | || || ||||| ||||| || |||||||| Sbjct 7543 GCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTG 7499 >seq608441 Length=509 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || ||||| || || || ||||| ||| ||||| Sbjct 311 CAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCCTCTGAT 370 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| |||||| |||||||| ||||| || ||| || || || Sbjct 371 ACCATAGAAAATGTAAAAGCAAAA-ATTCAAGACAAAGAGGGCATTCCTCCAGATCAGCA 429 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| || ||||| || || || | ||||| ||| | || || ||||||||||| | Sbjct 430 GCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCCGATTACAACAT 489 Query 206352 CCAGAAAGAGTCTACTCT 206369 ||||||||| || ||||| Sbjct 490 CCAGAAAGAATCGACTCT 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1171631498193873