Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq51755 210 2e-49 seq237220 205 9e-48 seq255931 105 6e-18 seq608441 104 2e-17 >seq51755 Length=2487 Score = 210 bits (232), Expect = 2e-49 Identities = 352/509 (69%), Gaps = 0/509 (0%) Strand=Plus/Plus Query 24817 AAAATTGTAGCGGCTTACTTCGTCGAGTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGAC 24876 ||| |||| | || ||||||||||| ||||||||||||| | |||| |||| ||| Sbjct 982 AAAGTTGTGGGCGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGAC 1041 Query 24877 AAAGTGCCCGCGCCCAATTTGTCGCACTTGCTATACGCTTTCGTGCCGATATGCGGCGGC 24936 | || | || || || | || ||||| |||| ||| | ||||| || || || Sbjct 1042 CGCATCCCGGTTCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGT 1101 Query 24937 GAGGGCATAAACGACGCTCTCAAAACAGTTCCCGGTAGTTTTGAGGCGCTGCAGCGCTCG 24996 || ||||| || ||| | | ||| | || || |||||| | || ||||||| || Sbjct 1102 GATGGCATCAATGACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGCGTTCA 1161 Query 24997 TGCGCCGGGCGCGACGATTTTAAGGTAACCATTCACGACCCCTGGGCCGCCATCCAGAAA 25056 ||| ||| || || || || ||||| | || ||||| |||||||| ||| | ||||| Sbjct 1162 TGCAGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAG 1221 Query 25057 CCGCAGAAAGGCGTCTCCACTTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTAATG 25116 || || || || | || | ||||||||||| |||||||| ||||| || || | ||| Sbjct 1222 CCTCAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATG 1281 Query 25117 GGCCTGAAATTAGCTAATCCACACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACCTTG 25176 ||||| ||| ||| | || ||| | | | ||||| || |||||||| ||| Sbjct 1282 CAGTTGAAACAAGCGAATACTGGTTTAAAGATCTTACCTTCGATTGGTGGCTGGACATTG 1341 Query 25177 TCAGATCCATTCTTTCACATGCATGACGCGACCGTGCGTCAAACGTTCATCGATTCCGTC 25236 | ||||| ||||| | | || ||| |||| | ||| | | ||||| Sbjct 1342 GCCGATCCCTTCTTCTTCTTCACCGATAAAACCAAGCGTGACCGTTTCGTTGGCTCCGTG 1401 Query 25237 GAGGACTTTCTCTTGACTTGGAAGTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCG 25296 | ||||| ||| || |||||||| ||||| || ||||| ||||| |||||||| || Sbjct 1402 AAAGACTTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTCCCT 1461 Query 25297 GGCGGCAAAGGGGCCAATCCTCACGTCGG 25325 ||||||||||| || || ||| || |||| Sbjct 1462 GGCGGCAAAGGCGCTAACCCTGACCTCGG 1490 >seq237220 Length=3575 Score = 205 bits (226), Expect = 9e-48 Identities = 705/1085 (65%), Gaps = 21/1085 (2%) Strand=Plus/Minus Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610 ||||| || ||| || | ||||| |||||||| |||||||||||||| || ||||| Sbjct 2465 ACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTT 2406 Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670 | || | ||| || | | ||||| ||||| | | |||| ||||||| || Sbjct 2405 AAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCGGCTCAGCA 2346 Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730 || | |||||| ||||| |||||||| || ||||| || || || ||||| | Sbjct 2345 ACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCCATTTGT 2286 Query 146731 ATCATGCGTTTTGTCTTCA-TTTCCCAAGCGGTTTTGTACA-GCCCCTTAACGCTATCTG 146788 || | |||||| || | |||||||| | || || || | | | | || || | | Sbjct 2285 ATTGTT-GTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCTCGTATTTCTGTA-G 2228 Query 146789 GAATACCTTCAATGTTTTGAATAGAGCCCTTGT-GCGCAAAAATAG-TGTTTCGTATTTC 146846 | |||| ||| || ||||| ||||| || || | | | | || || | |||| ||||| Sbjct 2227 GTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTC--ATTTC 2170 Query 146847 GGG--CGTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGA 146904 | |||| | | || | || ||| || |||| ||||| || |||||| Sbjct 2169 CTCATCCCATAAA--TCTGCTTCTGTCAGATCACGAAGCAAATGGTGATTTACAACTTGA 2112 Query 146905 AACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCA 146964 || || || | | |||||||| |||| | ||| ||||||||| |||||||| ||| Sbjct 2111 AATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAAGGTTCAAAAGATTCA 2052 Query 146965 TTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTT 147024 ||||| ||||| || ||||| || | || || ||||| || | ||| | ||||| Sbjct 2051 TTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAATTG 1992 Query 147025 CGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGC 147084 || || || | | | ||||| | || |||| ||||||||| | | || Sbjct 1991 CGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTGGA 1932 Query 147085 GTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTA 147144 | |||||||| |||||||| | | ||| |||| || || || || || | || Sbjct 1931 TTTTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCCCTTCGTATGTT 1872 Query 147145 GTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATG 147204 ||| ||| | | || |||||||| ||||| || | ||||||||||| || Sbjct 1871 TCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCATAGTAAATA 1812 Query 147205 GTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGA 147264 ||||| ||||||| ||||| | |||||| || |||||||| | ||||| Sbjct 1811 GTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGGTAAACGCATT 1752 Query 147265 AGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTG 147324 | | ||| ||||| || | ||| || | ||| | || |||||||||||| | ||| Sbjct 1751 AAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCCTAAAATTG 1692 Query 147325 CTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGC 147384 || || || | ||||| | || ||||| || || || | || Sbjct 1691 GATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTCAAATTTTCT 1632 Query 147385 ACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGT 147444 |||| |||||| | | ||| | |||| | |||| ||| || || | || Sbjct 1631 GTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATATGTTTTGTTAT---CATTA 1575 Query 147445 ACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTC-GCT 147503 || | || | ||| ||||| || | ||||| || || | |||| | || | | Sbjct 1574 ACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGC---CACTTCATCATCAGAT 1518 Query 147504 GT--ACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGA 147561 || | | || ||||| | ||||||||| || ||||| ||| || ||||||| |||| Sbjct 1517 GTAAATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTTTCTGA 1458 Query 147562 TTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGC 147621 || ||||| | ||| || | ||||| || | |||||| || || ||||| ||||| Sbjct 1457 TTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACTTGA 1398 Query 147622 GTTTC 147626 | ||| Sbjct 1397 GCTTC 1393 >seq255931 Length=537 Score = 105 bits (116), Expect = 6e-18 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 25085 AGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACTTGA 25144 |||| |||||||| ||||| || || | ||| ||||| ||| ||| | ||| | Sbjct 1 AGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACAAGCGAATACTGGCTTAA 60 Query 25145 AGGTGCTGGCGTCGATCGGCGGCTGGACCTTGTCAGATCCATTCTTTCACATGCATGACG 25204 || | | | ||||| || |||||||| ||| | ||||| ||||| | | || Sbjct 61 AGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTTCTTCTTCTTCACCGATA 120 Query 25205 CGACCGTGCGTCAAACGTTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAAGTTTT 25264 ||| |||| | ||| | | ||||| | ||||| ||| || |||||||| | Sbjct 121 AAACCAAGCGTGATCGTTTCGTTGCCTCCGTGAAAGACTTCCTCCAAACCTGGAAGTTCT 180 Query 25265 TCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCCTCACGTCG 25324 |||| || ||||| |||||||||||||| || ||||||||||| || || ||| || ||| Sbjct 181 TCGATGGTGTCGATATTGACTGGGAGTTCCCTGGCGGCAAAGGCGCTAACCCTGACCTCG 240 Query 25325 G 25325 | Sbjct 241 G 241 >seq608441 Length=509 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || |||||||| ||| | ||||| ||||| || ||||| || | Sbjct 501 GATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTCCCAGCG 442 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || ||||| ||||||||||| ||||| ||||| || ||||||| ||| | Sbjct 441 AAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACA 382 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | | || ||||| | || | ||||||||||| |||||||| Sbjct 381 TTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTTA 322 Query 132110 ATGAAAATCTGCATG 132124 | |||||||||||| Sbjct 321 ACAAAAATCTGCATG 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472602226594680