Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq51755 277 2e-69 seq237220 237 1e-57 seq608441 107 2e-18 seq26808 102 7e-17 >seq51755 Length=2487 Score = 277 bits (306), Expect = 2e-69 Identities = 797/1215 (66%), Gaps = 26/1215 (2%) Strand=Plus/Plus Query 59923 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGAT 59982 ||||| || | ||| || || ||||||||||| || ||||||||||| || || || || Sbjct 982 AAAGTTGTGGGCGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGAC 1041 Query 59983 CGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCGGCGGC 60042 || | || ||| || || | ||| | || ||||| || || ||||| || || || Sbjct 1042 CGCATCCCGGTTCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGT 1101 Query 60043 GACGGTATCAACGACAGTCTTAAAACCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCG 60102 || || ||||| |||||| | ||| || || ||||| |||| | ||||| || Sbjct 1102 GATGGCATCAATGACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGCGTTCA 1161 Query 60103 TGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAA 60162 || || || || ||||| || || || || |||||||| ||||| ||| | ||||| Sbjct 1162 TGCAGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAG 1221 Query 60163 CCCCAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAATTAATG 60222 || ||||| | || | | |||||||| || ||||||||||| ||||| || | || Sbjct 1222 CCTCAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGAT- 1280 Query 60223 GCAG-CCAAACTGGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCT 60281 |||| |||| || ||| | | || | || || ||||| || || ||||| | Sbjct 1281 GCAGTTGAAACAAGCGAATACTGGTTTAAAGATCTTACCTTCGATTGGTGGCTGGACATT 1340 Query 60282 ATCCGATCCGTTCTTTTACTTTCACGATACGGATAAACGAAAGATTTTTGTAGATTCTGT 60341 ||||||| ||||| | ||| ||||| || || | ||| || | || || Sbjct 1341 GGCCGATCCCTTCTTCTTCTTCACCGATAAAACCAAGCGTGACCGTTTCGTTGGCTCCGT 1400 Query 60342 CGTGGAGTTTCTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCC 60401 || || || || || ||||| || ||||| |||||||| || || |||||||| || Sbjct 1401 GAAAGACTTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTCCC 1460 Query 60402 CGGCGGAAAAGGTGCCAATCCCAACGTAGGCGACGCCGAACGCGATCGCGAAACGTACAC 60461 ||||| ||||| || || || || | || | | || || || | ||| || Sbjct 1461 TGGCGGCAAAGGCGCTAACCCTGACCTCGGTGGTCCTAAAGACG-----GAGATGTATAC 1515 Query 60462 CAT--TCTGTTGAAAGATTTACGCGAGGCGCTAGATCGATTAACCCTCGAAACGAATCGA 60519 | || ||||||| ||||| | | | ||| | | || || | || Sbjct 1516 GTTCAGCTCATGAAAGAATTACGTCAAATGTTGGATGAGCTGGCGGCTGAGACTGGTAGA 1575 Query 60520 ACGTACGAGTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTCGTCGACTAC 60579 || |||||| ||||| || || || ||||| ||||| ||| || || ||||| Sbjct 1576 ACTTACGAGCTGACCTCTGCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTGAACTAC 1635 Query 60580 ACCGCTGCTCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTTAAAGGAGCC 60639 | | || || | || | ||| ||||| | |||| ||||| || || || ||| Sbjct 1636 AAGGAAGCCCAGAAGTACATGGATCATATTTTCGTCATGAGTTACGACTTCAAGGGTGCC 1695 Query 60640 TGGTCGAATAACGATCTGGGCTATCAGACTACTCTATACGCTCCTTCGTTTAATCCTAAA 60699 ||||| || || ||| || ||||||| ||||||||||||| || | | ||| || Sbjct 1696 TGGTCTAACGACACTCTCGGACATCAGACCGCTCTATACGCTCCGTCTTGGAGTCCAAAG 1755 Query 60700 GAACATTATACTACCGATTTTGCCGTTCGTGCTCTACTCAAGCAAAAAGTCGAGAATaaa 60759 ||| ||| || ||||| || | | | ||| || | ||| || | ||| Sbjct 1756 GAAACTTACACCACCGACTTCGGTATCAGGTATCTGCTGACCCAAGGTGTTCCGCCCAAA 1815 Query 60760 aaaaTTATTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGTAAGCGATTTTGTT 60819 || | ||||||| || || |||||||| || |||||||| || || || | | Sbjct 1816 AAGCTGGTTGTCGGTGTTGCTATGTACGGACGTGGCTGGACAGGAGTTCATGACTACAAT 1875 Query 60820 GACGATAATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAACATGGGAAGAC 60879 ||||| ||| || || ||||| || || || || || || ||||| ||| | ||| Sbjct 1876 GACGA-CATA--CCGTTCACCGGAGTAGCTAATGGCCCAGTTAAGGGAACTTGGCAGGAC 1932 Query 60880 GGAGTCGTCGACTATAGAGAGATTTTCAATAATTTCGTCGC--CAATAACCCGATGG--- 60934 || || || || ||||| |||| ||| ||| | || | || ||| |||| Sbjct 1933 GGCGTGGTGGATTATAGGGAGA---TCACGAATGGCATCACTTCAGGAAC---ATGGCAG 1986 Query 60935 -AATATTACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAACTCGACCGGCGAGCTC 60993 | ||||| ||| | | |||| ||||||| | ||| | |||||||| || Sbjct 1987 TACTATTATGATAAAATATCCCAAGCTCCGTACGTGTGGAATCCTACCACCGGCGACCTG 2046 Query 60994 ATCACTTACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATTGGACTAT-AG 61052 | || || || || | |||||||| | || || | ||||| || | || || || Sbjct 2047 GTGACCTATGATGATGCAAGGTCGGTTATTGAGAAGGGGAAATACGTGAGGAACAATAAG 2106 Query 61053 CTTGGGTGGTTTGTTCGCTTGGGAGATCGACGCCGACAACGGATTACTTCTAAACGCCAT 61112 ||| ||||| ||||||||||||| || ||||| ||||| || | |||||||| || Sbjct 2107 CTT-GGTGGACTGTTCGCTTGGGAAATAGACGCTGACAATGGGGATATCCTAAACGCAAT 2165 Query 61113 GAACAGCGGTCTCGG 61127 ||| | ||||| || Sbjct 2166 GAATATGGGTCTAGG 2180 >seq237220 Length=3575 Score = 237 bits (262), Expect = 1e-57 Identities = 918/1421 (65%), Gaps = 35/1421 (2%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || || || || |||| ||| || || ||||| |||| || ||| ||||| || || ||| Sbjct 2465 ACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTT 2406 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 |||||| | | ||| |||||| ||| ||||| | || | || |||| || || Sbjct 2405 AAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCGGCTCAGCA 2346 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || | ||| | ||||| || ||||| || ||| ||| || || || ||||| || Sbjct 2345 ACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCCAT-TTG 2287 Query 136819 AATAGTACTTTTTGCTTAA-TTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 || || |||| || || |||||||| | || ||| | | || | | | || Sbjct 2286 TATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCTCGTATTTCTGTAGG 2227 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTT---TGATGATTTTCATCATGAGATC 136934 || |||||||| |||| |||||| || || | | |||| || |||| || Sbjct 2226 TATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCATTTCCTC 2167 Query 136935 AGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACG-AGATGCTGATTTACTACTTGAT 136993 | | | | | |||| ||| | || | | ||| | | ||| |||||||| |||||| Sbjct 2166 ATCCCATAAATC--TGCT-TCTGTCAGATCA-CGAAGCAAATGGTGATTTACAACTTGAA 2111 Query 136994 ATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGT 137053 |||| || |||| || | | | || | |||| |||||| || || || ||||| | Sbjct 2110 ATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAAGGTTCAAAAGATTCAT 2051 Query 137054 TGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCC 137113 | || || |||||||| || || | || || ||||| || ||||| | ||||| | Sbjct 2050 TATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAATTGC 1991 Query 137114 GTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGAT-TGTTCGAT 137172 | | || || || | | || || | |||||| ||| | || |||| ||| Sbjct 1990 GAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTGGAT 1931 Query 137173 TGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAA 137232 | | ||||||||| || |||| || | || |||||||||| || || | || Sbjct 1930 T----TTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCCCTTCGTAT 1875 Query 137233 GAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGTAA 137292 | || || ||| | | || || | |||| ||| ||| ||| ||||||||| Sbjct 1874 GTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCATAGTAA 1815 Query 137293 ATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATCC 137352 |||||||| | |||| | ||| | || |||||||| | || ||||| || | | | Sbjct 1814 ATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGGTAAACGC 1755 Query 137353 AATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAAA 137412 | || | |||||||| ||||| ||||||| ||| || || ||||||| || ||||| Sbjct 1754 ATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCCTAAAA 1695 Query 137413 TTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGATTG 137472 || ||| ||| || || |||||| | ||| |||| || ||| |||| | ||| Sbjct 1694 TTGGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTCAAATTT 1635 Query 137473 TTAGTAACGACTCTGGACACTTTGTAGAGCAATTCG--AAATCGAAGCTTTTAGACTGTT 137530 | || || | | | |||| | | | |||| |||| | |||| | | Sbjct 1634 TCTGTTACAGTTTTAGTAACTTCTTTTA--ATTTCGCAAAATTATATGTTTT---GTTAT 1580 Query 137531 TGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCTGTATTGT 137590 ||| |||| |||| | ||||||||| |||||||||||||| ||| ||| || | Sbjct 1579 CATTAACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCACTTC---ATCAT 1523 Query 137591 C-GCTGT--ATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAATTCT 137647 | | ||| ||| ||| ||||| | ||| || || || | || || ||||| | Sbjct 1522 CAGATGTAAATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTT 1463 Query 137648 TTTGATTGTTTTTCTCGTTGACGTG-ATCTTTATATATCATATACGGAGTTCCGGTTTCG 137706 | ||||| |||| || | || || ||||||| ||| ||| || ||||| || || || Sbjct 1462 TCTGATTACTTTT-TCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCT 1404 Query 137707 ACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATTTGTTCTCTAAACTTG 137766 ||||||| || | ||| | | ||| | || | | ||||| |||| | Sbjct 1403 ACTTGAGCTTCTATTATTGCTTTCCAAAGTACTTGTGCTCTTACTTGTTTAATAAATCTA 1344 Query 137767 CCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCCCATAACAATC-GTTAG 137825 || |||| | |||| |||| || ||||| || ||| |||| || | || Sbjct 1343 TTTTCTTTTTCATAGGTTTCATATAAGGATTCAAATTCTTTTCCC-CAACAGTCAGCTAA 1285 Query 137826 ACCCGGACACTCGTCGGGACACATCAACGACCATTTTCCTCCCGTCCTAACCCTTTCCAT 137885 || || || |||| |||||||| | | |||| || | | ||| |||| ||| Sbjct 1284 CCCAGGGCAATCGTGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCAT 1225 Query 137886 GAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATATCTTCGGCGCC 137945 ||| ||| ||| |||| | ||| ||| ||| || | || | ||||| || Sbjct 1224 GAAAAGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCC 1165 Query 137946 CATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGATATAGAC 138005 | || |||||||| || || ||| ||||| |||||||| || || | |||||| Sbjct 1164 AGTGTTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCATGGTTCTAAATAGAC 1105 Query 138006 GGCCATAGCTCCTTTTC---TTTTACCGCCTTGATCCACAT 138043 || | ||| || | | ||||| |||||||| |||| Sbjct 1104 TGCAAAAGCACCAGGGCGCTTATTACCTCCTTGATCAACAT 1064 >seq608441 Length=509 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 || || |||||| | ||||| ||||| | || || ||| | || || | |||||||| Sbjct 301 AACCACCATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGA 360 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 |||| ||||| || || | |||||| ||||||| || |||||||| || || || Sbjct 361 AGCCTCTGATACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCC 420 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 |||||||| |||| |||| || || |||||||| ||||| | | | | ||| Sbjct 421 AGATCAGCAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCCGA 480 Query 25348 TTACAATATTCAAAAAGAATCCAC 25371 |||||| || || |||||||| || Sbjct 481 TTACAACATCCAGAAAGAATCGAC 504 >seq26808 Length=8541 Score = 102 bits (112), Expect = 7e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 |||| ||||| | || || ||||| | || || || | || || | || || ||| Sbjct 7376 AACACAATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAA 7435 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || ||| |||||||| | || ||| |||||| || || || ||||| ||||| Sbjct 7436 GCTTCCGACACTATCGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCGCCA 7495 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 || || ||| | ||||| | | ||| |||||| | ||||||| | | | | || Sbjct 7496 GACCAACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTCTTTCAGAC 7555 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || ||||| || ||||||||||| |||||||||| || ||| | |||||||| || Sbjct 7556 TATAATATCCAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGAGGAGGTAA 7611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441350527400160