Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq237220 650 0.0 seq562919 143 4e-29 seq601675 105 9e-18 >seq237220 Length=3575 Score = 650 bits (720), Expect = 0.0 Identities = 1219/1778 (69%), Gaps = 24/1778 (1%) Strand=Plus/Minus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||| | |||||||| || | || || |||||||| || | ||| ||||| || Sbjct 2471 TTATCTACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCCT 2412 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||| | ||| | ||||| || ||||| ||| |||| || ||| | || Sbjct 2411 GTTTTTAAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCGGC 2352 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 || || | ||| ||||| | |||||||||||||| || |||||||| | ||| || ||| Sbjct 2351 TCAGCAACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCC 2292 Query 68545 ATTTTTATAATACTCTTTTGA--GGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATAT 68602 |||| ||| | | |||||| | ||||||||||| |||||| | | | | || | Sbjct 2291 ATTTGTATTGT--TGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCTCGTATTT 2234 Query 68603 CATCTGGAAGGCT--CG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGA 68659 | || | || || ||||||| || |||||| || | |||||| | ||| || | Sbjct 2233 CTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCA 2174 Query 68660 TCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTT 68719 | || |||| ||| || | | || || | | | | ||| | ||| |||| || | || Sbjct 2173 TTTCCTCATCCCATAAATCTGCTTCTGTCAGATCACGAAGCAAATGGTGATTTACAACTT 2114 Query 68720 GAAATTCCCCAGATAACAC---TCTACGAGTGTAAATATTACTGGTATATGGTTCCACAG 68776 ||||||| |||||||| || ||| || ||||||||| || | ||||| | || Sbjct 2113 GAAATTCTCCAGATAAAACACGTCTTTGA---TAAATATTAGAAGTGAAAGGTTCAAAAG 2057 Query 68777 ATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAAC 68836 ||||||||||||| | ||| || || ||||| ||||| ||||| ||||| | ||| | | Sbjct 2056 ATTCATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAG 1997 Query 68837 TATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAG 68896 ||| | ||| ||||| | || || | ||||| | |||| ||||| | ||| | Sbjct 1996 AATTGCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAATCTG 1937 Query 68897 ATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTA- 68955 ||| |||||| | ||||| |||| || || ||||||| | ||| || Sbjct 1936 TTGGATTTTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGG-GCTCCCTTCG 1878 Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 |||||||| || ||| | || ||| |||| |||||||||||| |||||||| || || Sbjct 1877 TATGTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCATAG 1818 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||| ||||| || || | | ||| || | |||||| |||| ||| | || || Sbjct 1817 TAAATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGGTAAA 1758 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | | |||||| ||||| || | || ||||| || || || ||||||| ||| || Sbjct 1757 CGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCCTA 1698 Query 69136 TTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195 ||| || ||| ||||| |||| |||||||||||| | || || |||||||| | | Sbjct 1697 AAATTGGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTCAAA 1638 Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGT---CCATCT 69252 ||| ||| |||| || || |||| ||| ||||| | || | ||| Sbjct 1637 TTTTCTGTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATATGTTTTGTTATCA 1578 Query 69253 ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTT 69312 ||||||||||||| || || | ||| |||| || || ||||| || |||| | | | Sbjct 1577 TTAACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCACTTCATCATCAGAT 1518 Query 69313 GCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGA 69372 | | ||| || ||| || || || || ||||||||||| || || || | ||||| |||| Sbjct 1517 GTAAATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTTTCTGA 1458 Query 69373 TTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGA 69432 ||||| ||| | ||||| | || || | | || | ||||||||||| || | ||| Sbjct 1457 TTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACTTGA 1398 Query 69433 GATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAA--CGCTTCT 69490 | ||| || || | |||||||| || || ||| | || | ||| | || | Sbjct 1397 GCTTCTATTATTGCTTTCCAAAGTACTTGTGCTCTTACT--TGTTTAATAAATCTATTTT 1340 Query 69491 CTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAG 69550 |||||||||| | ||||| ||| ||||| | ||||||| ||| | || |||| Sbjct 1339 CTTTTTCATAGGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAACCCAG 1280 Query 69551 GACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATA 69610 | || || | |||||||| | | ||| || |||||| | ||||| |||||| || | Sbjct 1279 GGCAATCGTGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGAAAA 1220 Query 69611 GATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 |||| || ||||| | || ||| || || |||| | |||||| ||||| || | Sbjct 1219 GATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCAGTGT 1160 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 |||| || | ||| | || || | ||||| | |||||||||||||| ||| | || | Sbjct 1159 TTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCATGGTTCTAAATAGACTGCAA 1100 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 | || || || ||||| ||||| ||||| | ||||| || || ||||| || |||| Sbjct 1099 AAGCACCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAACTC 1040 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 | ||| || | || |||||| || |||||||||||| | |||||| | ||| | | Sbjct 1039 GTAACATTGGTACAAGACCATTTGACACACCATTTGTTCCTGCTATATAAGTACCTTTAG 980 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | | ||| | | | ||| ||||| ||||| |||||| || | |||||| Sbjct 979 CCCTTATACAGTGGACATGGACACCAATTCCACCTGCAGATTTAGATATCAAAGCACACT 920 Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGC 69970 | || || || || || || || ||||||||||||||| |||| | |||||||| Sbjct 919 GCTTTAAGGTATCGTAAATCCCTTCTATGCTATCATCTTTCATAGCTATTAGAAAACATG 860 Query 69971 TAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030 || | ||| | || |||| | || ||||| ||||| || |||||||| Sbjct 859 ACGATAGCTGAGGGCGTGGAGTTGCAGCGGAGAATAAGGTAGGGCTGGCATGAGTGAAAT 800 Query 70031 ATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATT 70089 |||| |||||||| | ||| ||||| | || |||| || ||||| ||| ||||||| Sbjct 799 ATTTCTCAGAAAGTAAATTATATGTATTTATGGCTGCATCAATATCTTCAC-CATGAATT 741 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 || || | || | |||||||||||| ||||||||||| Sbjct 740 CCAATGGACACTCTCATCAACATATGTTGAGGTCGTTC 703 >seq562919 Length=404 Score = 143 bits (158), Expect = 4e-29 Identities = 167/223 (75%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||| | || ||| ||||||||||| ||||| ||||| | ||||| Sbjct 259 CCTCATCCCTGGAAATAAGCTCATTACTGAATGTGAGTCCTGGCATAAGACCCCTCTTTT 200 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || |||| ||||||| || || || || || |||||||| |||||||| | Sbjct 199 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAGAAAAATATTCCTTCTACAGCTGCAAAGG 140 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTA-TCAT--TATGTATCCACTTCTGTGCCCAATCAG 39815 |||||| ||| || || | ||| | || | | ||||||| | |||||||||| Sbjct 139 CAACAATTCTTTCACCAAATGTTGCAGTCTTGCTTGCGATCCACTGTAGAGCCCAATCAG 80 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 |||||||||||||||| || | ||||| || |||||||| || Sbjct 79 CTTTCTTCTTTACACAGGGAAGAGTTTCAATGGCATTAAACAG 37 >seq601675 Length=487 Score = 105 bits (116), Expect = 9e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 ||||||||||| | || ||||||||| ||||| | ||||| || || ||||| || Sbjct 369 TATGTATCTATAAGAAGGGAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAG 310 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || || ||||||||||| ||||| | ||| || ||| ||||||| || | || ||| Sbjct 309 CCATAGAAACATCTTGCCTCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTT 250 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAA 40059 ||||| || || || || ||| ||||| ||||| | ||||| || || || Sbjct 249 TCATTTACAATGCCGTCGGAAGCCGCAAAGAATGCAAGAACATGCTTGATGAA 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 681130926733320