Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq562919 87.8 2e-12 seq26808 86.0 5e-12 >seq562919 Length=404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 108592 ATGAGCTCGTTACTGAACGTCAAACCCGGCATAATACCTTTCGTTTTAATGTAAAATATT 108651 || ||||| |||||||| || | || ||||||| ||| || |||| | | || || Sbjct 245 ATAAGCTCATTACTGAATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATG 186 Query 108652 GCCGCAAAACTGCCGGaaaaaaaTATTCCCTCGACAATTGCAAACGCAACCATTCTTT 108709 | ||||||||||| || ||||||||||| || ||| |||||| ||||| ||||||| Sbjct 185 GAAGCAAAACTGCCCGAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTT 128 >seq26808 Length=8541 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 27016 TATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT 27075 |||| ||||| | | | ||| || ||||| | || || ||||| || ||||| |||| Sbjct 7613 TATTACCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGT 7554 Query 27076 CGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 | | |||| | ||||| | ||||||||||| | |||||||| ||||| || | Sbjct 7553 CTGAAAGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTG 7494 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 |||| | ||| || || || || || ||| | |||| | |||||| | |||| Sbjct 7493 GCGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTT 7434 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | || || | || ||||| || ||||| || || || ||||| Sbjct 7433 CCACCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCAT 7382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421449458939256