Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq237220 107 2e-18 >seq237220 Length=3575 Score = 107 bits (118), Expect = 2e-18 Identities = 435/677 (64%), Gaps = 15/677 (2%) Strand=Plus/Minus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 ||| | |||||||| |||||||||| || || || || || || ||||| || |||||| Sbjct 2072 GTGAAAGGTTCAAAAGATTCATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATT 2013 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 ||||| ||||||||| || ||||| || | || ||| || || | | | | Sbjct 2012 GGTGCTATCAAAAGAGAATTGCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTC 1953 Query 110840 CAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGG 110897 ||||| | | | || ||| || |||| |||| || |||| | | ||| | Sbjct 1952 CAGTCCCA-TAAATCTGTTGGATTTTTATTCC-ACATTTCGTACTGTAATATACCTAGAC 1895 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG 110957 || || || || | ||||| || || | ||| || |||||||| || | Sbjct 1894 TTGCAGGGCTCCCTTCGTATGTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTG 1835 Query 110958 CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 111017 | || | | | | | || || |||||||| || | ||| | | | ||||| Sbjct 1834 CTTCTAATGCTCCATAGTAAATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTC-- 1777 Query 111018 CTGAA---TCAAATGCGTAGCGGCAC-AAAATAAATACATCCGCGAGACCTTGAACACCC 111073 || | || | | ||| ||| |||||||| |||| || |||||||||||||| Sbjct 1776 -TGGACTTTCGTAAG-GTAAACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCT 1719 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 111133 | |||||||||| || | | ||| || ||| || | ||| |||||| ||||| Sbjct 1718 ATTCCAATAGGTCGATGCCTAAAATTGGATTTTTTTGCTTCCGGAACAGGATAATAATTT 1659 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193 |||||||| | || | ||||| || ||| | || || | ||| | | ||| || Sbjct 1658 ACGTCAATGATTTTATTCAAATTTTCTGTTACAGTTTTAGTAACTTCTTTTAATTTCGCA 1599 Query 111194 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 ||| | | || | | ||||| ||| || | ||||| || || || || ||| Sbjct 1598 AAATTATATGT---TTTGTTATCATTAACAAACATATTTAGGGCAATAGAAGCTAAGTTG 1542 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 || || ||| ||||| | | ||| | |||| ||||| || || | ||| || Sbjct 1541 CATACTGCCACTTCATCATCAGATGTAAATTCTACTATTTCAGTGCACAGGTTACTACAT 1482 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATG 111373 ||||| || || ||||| || || ||||| || | || || | ||| || | | |||| Sbjct 1481 TTAATGGTACCTAAATTTTTCTGATTACTTTTTCTATTACATGAATCTTTAAATAACATG 1422 Query 111374 TAGGGCGTCCCCGTCTC 111390 || || || || ||||| Sbjct 1421 TATGGAGTACCAGTCTC 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622749363784800