Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq51755 250 2e-61 seq608441 125 6e-24 seq26808 123 2e-23 seq255931 89.7 4e-13 seq10425 87.8 2e-12 seq525368 82.4 7e-11 seq219547 82.4 7e-11 >seq51755 Length=2487 Score = 250 bits (276), Expect = 2e-61 Identities = 641/971 (66%), Gaps = 9/971 (1%) Strand=Plus/Minus Query 53593 TAATCAACGACTCCGTCTTCCCATGTGCCTGTAACAGGGCCAGTTGCCACACCGGTGAAC 53652 ||||| || || ||||| | ||| || || |||| |||||| | || || ||||||||| Sbjct 1946 TAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACTCCGGTGAAC 1887 Query 53653 GGATTGTCATCGCGGTAGCCGCTCACTCCAGTCCAACCGCGCCCGTACATCGCCACTCCG 53712 || |||| || |||| | ||||| ||||| || || |||||||| || || ||| Sbjct 1886 GGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAACACCG 1827 Query 53713 AGAACAATTTTTTCCTGTTGAACTTTTTGTTCGAGCAACGCGCGCACGGCAACATCGGCC 53772 | ||| | |||| | |||| ||| |||| | | | | |||| Sbjct 1826 ACAACCAGCTTTTTGGGCGGAACACCTTGGGTCAGCAGATACCTGATACCGAAGTCGGTG 1767 Query 53773 GTGTAATGCTCGCTGGGAGACCAAACCGGCGCGTAAATCGCCGTTTGATGTCCCAAATCG 53832 |||||| || | ||| |||| ||| ||||| | || || |||||||| | | | Sbjct 1766 GTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAGAGTG 1707 Query 53833 GTGTTTGACCAAGCGCCTTTAAAATCATACGACATTaaaaaaaTTCTGTCCAGGTATTGT 53892 ||| ||||| || || || || || || ||| | ||||| |||| ||| | Sbjct 1706 TCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTACTTC 1647 Query 53893 TGGGCGTCGCGATAGTTGACGACCGCAATTTTATCATTGCCTGCACTGATTGCGCTAGTC 53952 ||||| || ||||| || || || || || || |||||||| || ||| Sbjct 1646 TGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGAGGTC 1587 Query 53953 AACTCGAACTTTCGTCCAGTTTCCAATTCCAATTGATCCAACATTTGTCGCAACTCTTTT 54012 | |||| | ||| ||||| || ||| | |||||||||||| || || ||||| Sbjct 1586 AGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTCTTT- 1528 Query 54013 AACAACACCACATACGTTAAACTATCT---TTTTGAGGATCGCCCACGGACGGATTGGCA 54069 || | | | |||| | || |||| | || |||| | || | | || || || Sbjct 1527 --CATGAGCTGA-ACGT-ATAC-ATCTCCGTCTTTAGGACCACCGAGGTCAGGGTTAGCG 1473 Query 54070 CCGTTTCCGCCAGGAAACTCCCAATCGACGTCGACACCATCAAAAAATTTCCACGTCAAT 54129 || || |||||||| ||||||||||| | ||||||||||| || || ||||| || Sbjct 1472 CCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTGG 1413 Query 54130 AGGAATTCGCGCACGGAATCCACAAACACTTTGCGTTTGGAAGAATCGTGGAAATGGTAA 54189 ||||| || |||||| | || || | || |||| |||| ||| | | Sbjct 1412 AGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCGGTGAAGAAGAAG 1353 Query 54190 AACGGATCCGATAACGTCCAACCGCCGATTGACGGTAATACTTTGACGTTGGGATTCGCT 54249 || ||||| | || ||||| || || || || ||||| | || | | ||||||| Sbjct 1352 AAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGTATTCGCT 1293 Query 54250 TTTTTCACGGCCATAATCTGTCCAAAATTGCCTTTATACGGTTCGTTCCAGGCGGAGACG 54309 | ||||| ||| | ||| || || || ||||| || || |||||||||| || | Sbjct 1292 TGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAAT 1233 Query 54310 CCTTTTTGCGGTTTTTGCACCGCCGCCCAAGGATCATGGATGGCTACTTTAAAATCCGAC 54369 || ||||| || || |||| |||||||| ||||| ||||| | || || || || Sbjct 1232 CCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCA 1173 Query 54370 CGGCCAGCGCAAGATCTTTGTAGAGCTTCAAAACTGCCCGGTATAGTTTTTAAACTGTCA 54429 ||||| ||| || | || | |||| ||||||||| || ||| ||||||||| Sbjct 1172 CGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTTCAAACTGTCA 1113 Query 54430 TTTATTCCGTCGCCGCCGCAAATTGGCACAAAACCGTACAAAAGATGCGTCAAATTAGGC 54489 || || || || || || ||||| || | || ||||| | | ||| |||| || || Sbjct 1112 TTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGTTCGGA 1053 Query 54490 ACGGGCACTTTGTCCATTGGAAAATTTCGTCCGTACACTCCCCATTCTACAAAATAGGCG 54549 || || | ||||| || || |||| ||||| |||||||| || || |||||| Sbjct 1052 ACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAAGTAGGCG 993 Query 54550 GCCACAACTTT 54560 |||||||||| Sbjct 992 CCCACAACTTT 982 >seq608441 Length=509 Score = 125 bits (138), Expect = 6e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| |||||||| || || || | || || | ||||| ||| | | Sbjct 306 CCATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCCT 365 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | || || | || ||| |||||||||||||||||| ||||| || || |||| Sbjct 366 CTGATACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATC 425 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||| || |||||| | |||||| | || | |||||||||| Sbjct 426 AGCAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCCGATTACA 485 Query 27166 ACATTCAAAAGGAGTCGAC 27184 |||| || || || ||||| Sbjct 486 ACATCCAGAAAGAATCGAC 504 >seq26808 Length=8541 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26973 TTTAATTTAT--ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTC 27030 |||| |||| || | ||||||||||| || ||||| || || || ||| | ||||| Sbjct 7365 TTTATTTTAGTAACACAATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACAT 7424 Query 27031 TTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAG 27090 | || |||||| | |||||| | || || | |||||| |||||||||||||| |||| Sbjct 7425 TGGAGGTGGAAGCTTCCGACACTATCGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAG 7484 Query 27091 GCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA 27150 | || || || || ||||| ||| | || | ||||| |||||||| ||||| | | Sbjct 7485 GTATTCCGCCAGACCAACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCA 7544 Query 27151 CCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 | |||| || || || || || || || || || | ||||| |||||| Sbjct 7545 CTCTTTCAGACTATAATATCCAGAAAGAATCCACACTTCATTTAGTTTTG 7594 >seq255931 Length=537 Score = 89.7 bits (98), Expect = 4e-13 Identities = 339/527 (64%), Gaps = 9/527 (2%) Strand=Plus/Minus Query 53767 TCGGCCGTGTAATGCTCGCTGGGAGACCAAACCGGCGCGTAAATCGCCGTTTGATGTCCC 53826 |||| |||||| || | ||| |||| ||| ||||| | || || || ||||| Sbjct 523 TCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGTCCG 464 Query 53827 AAATCGGTGTTTGACCAAGCGCCTTTAAAATCATACGACATTaaaaaaaTTCTGTCCAGG 53886 | | | ||| ||||| || || || || || || ||| | ||||| ||||| | Sbjct 463 AGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCCATG 404 Query 53887 TATTGTTGGGCGTCGCGATAGTTGACGACCGCAATTTTATCATTGCCTGCACTGATTGCG 53946 || | ||||| || ||||| || || || || || || || ||||| || Sbjct 403 TACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATGGCA 344 Query 53947 CTAGTCAACTCGAACTTTCGTCCAGTTTCCAATTCCAATTGATCCAACATTTGTCGCAAC 54006 |||| |||| | ||| ||||| || ||| | |||||||||||| || || Sbjct 343 GAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAAT 284 Query 54007 TCTTTTAACAACACCACATACGTTAAACTATCT---TTTTGAGGATCGCCCACGGACGGA 54063 || || || | | | |||| | || |||| | || |||| | || | | || Sbjct 283 TCCTT---CATGAGCTGA-ACGT-ATAC-ATCTCCGTCTTTAGGACCACCGAGGTCAGGG 230 Query 54064 TTGGCACCGTTTCCGCCAGGAAACTCCCAATCGACGTCGACACCATCAAAAAATTTCCAC 54123 || || || || |||||||| |||||||| || | ||||||||||| || || ||||| Sbjct 229 TTAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTCCAG 170 Query 54124 GTCAATAGGAATTCGCGCACGGAATCCACAAACACTTTGCGTTTGGAAGAATCGTGGAAA 54183 || ||||| || |||||| | || || | || |||| |||| ||| Sbjct 169 GTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTATCGGTGAAG 110 Query 54184 TGGTAAAACGGATCCGATAACGTCCAACCGCCGATTGACGGTAATACTTTGACGTTGGGA 54243 | | || ||||| | || ||||| || || || || ||||| | || | | | | Sbjct 109 AAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAGCCAGTA 50 Query 54244 TTCGCTTTTTTCACGGCCATAATCTGTCCAAAATTGCCTTTATACGG 54290 ||||||| ||||| ||| | ||| || || || ||||| || || Sbjct 49 TTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGG 3 >seq10425 Length=666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || || |||||| | || || ||||| || || ||||| Sbjct 332 ATGCAAATTTTCGTAAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCGTCA 391 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||| |||||||||||||| || || || ||| ||||| Sbjct 392 GATACCATCGAGAATGTGAAAGCAAAGATTCAAGACAAAGAGGGAATCCCTCCCAATCAA 451 Query 27108 CAG 27110 ||| Sbjct 452 CAG 454 >seq525368 Length=351 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 135473 TTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGC 135532 |||||||| |||| || | || ||| ||| ||||||||||| || ||| | | Sbjct 58 TTGTGGAATTCGGCTCAGCTACAACTTGTTAAAGAGGGCAAAATGCATGGCTTTTTAAGA 117 Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACAC 135592 ||||||||| || || |||||||||||| |||| | || | || || || | | Sbjct 118 ATGTATTGGTGTAAGAAAATATTGGAATGGACTGCTACTCCGGAGGATGCTCTTAAGTAT 177 Query 135593 GCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGG 135642 ||||||| ||| || ||| | |||||| | ||||| | ||| ||| ||| Sbjct 178 GCAATATATTTGAACGATCATTACAGTATCGATGGGAGAGATCCAAGTGG 227 >seq219547 Length=1641 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || || |||||| | || || ||||| || || ||||| Sbjct 1322 ATGCAAATTTTCGTAAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCGTCA 1263 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| || |||||||||||||| || || || ||| ||||| Sbjct 1262 GATACCATCGAGAATGTGAAAGCTAAGATTCAAGACAAAGAGGGAATCCCTCCCAATCAA 1203 Query 27108 CAG 27110 ||| Sbjct 1202 CAG 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431354752641809