Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq608441 100 2e-16 seq387503 82.4 5e-11 >seq608441 Length=509 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||||| ||||| ||| || ||| | || |||||| | | Sbjct 308 ATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCCTCT 367 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| |||||| |||||||| || |||| || | Sbjct 368 GATACCATAGAAAAT--GTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATC 425 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | ||||| || || |||||| | || |||| ||| | || |||||||||| Sbjct 426 AGCAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCCGATTACA 485 Query 27968 ACATCCAAAAAGA 27980 ||||||| ||||| Sbjct 486 ACATCCAGAAAGA 498 >seq387503 Length=244 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 24553 AAAAGGCTACCACGGATTTCATATTCACGAATTTGGCGATGTGACCAACGGTTGCACGTC 24612 ||| ||| | ||||| || ||| | ||||||||||| || || |||||||||||||| Sbjct 180 AAAGGGCAAACACGGTTTCCATGTGCACGAATTTGGTGACAACACAAACGGTTGCACGTC 121 Query 24613 GGCCGGTGAGCATTTCAATCCGTTTCACCAAGATCACGGTGGTCCTAA 24660 ||| || | ||||||||||| | |||||||| |||||||| || Sbjct 120 GGCTGGAGCTCATTTCAATCCTGGAAAACAAGATCATGGTGGTCCCAA 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 352943927196351