Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq26808 136 3e-27 seq608441 134 9e-27 seq462883 84.2 1e-11 seq162377 82.4 5e-11 >seq26808 Length=8541 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||||| ||||| || || || || | || || || | | Sbjct 7381 AATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTC 7440 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| | ||| |||||| ||||| |||||| | |||||||| || Sbjct 7441 CGACACTATCGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCGCCAGACCA 7500 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || |||||||| |||||| | ||||| | |||||| | || || || Sbjct 7501 ACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAA 7560 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| |||||| | ||||||||||| || | ||||||| Sbjct 7561 TATCCAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGAGGAGG 7608 >seq608441 Length=509 Score = 134 bits (148), Expect = 9e-27 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||| ||||| || ||||| || || | ||||| || || | Sbjct 308 ATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCCTCT 367 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| ||||| ||||||| |||||||| || | || |||||||| Sbjct 368 GATACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAG 427 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || |||||||| ||||||| ||| || ||| |||||||||| Sbjct 428 CAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCCGATTACAAC 487 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 488 ATCCAGAAAGAATCGAC 504 >seq462883 Length=292 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 32823 TGAACATAATCTTTTCCTTTAATCAATTTTACGTATTGACAATTGGGAAACCAACGAGCG 32882 |||| ||| || |||||| | || || |||||| ||| | ||||| | |||| Sbjct 291 TGAATATAGTCACGTCCTTTCACCAGTTGCACGTATGCGCAACGGTCGAACCATCTAGCG 232 Query 32883 TGCATATGCCAAGGGTCGTCATCAGTTTCCCAATCTTTCAAACCGCCGTCGCAGTAAAAA 32942 ||| | ||| || |||||||| ||||||||||||| | || ||||| || || || Sbjct 231 TGCTGTTCCCACGGAACGTCATCACTTTCCCAATCTTTTAGCCCTCCGTCACAATAGAAG 172 Query 32943 CACACAACTTTGTCGCCTCTTCCGCTATaaaaaaaaCCCGCTTCTGCTAATTGTGTGGGT 33002 || | |||||| ||| || |||| ||||| || || || || |||| |||| Sbjct 171 CATTTAGTTTTGTCACCTTGGCCTGTATAGAAAAATCCGGCCTCCGCCAATTCCTCGGGT 112 Query 33003 TTCTGTTGCAAAGATTTTGGCCAATC 33028 ||||| ||| | || | ||||| || Sbjct 111 TTCTGGCGCATACATCTCGGCCAGTC 86 >seq162377 Length=1555 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 ||||||||||| ||| | || ||||| ||||| || |||||||||| |||||| || Sbjct 3 CCAGATCAACAACGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACATTGTCA 62 Query 23782 GATTACAACATACAAAAAGAGTCCACATTACAT 23814 || ||||| || |||||||| |||||| | ||| Sbjct 63 GACTACAATATTCAAAAAGAATCCACACTCCAT 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335237540279804