Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq26808 158 3e-33 seq608441 131 4e-25 seq162377 102 2e-16 seq69742 100 7e-16 >seq26808 Length=8541 Score = 158 bits (174), Expect = 3e-33 Identities = 169/221 (76%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| || | || || ||||||||||| |||| ||| || || | | ||| | Sbjct 7600 AAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTCTGAAAGAGTGCG 7541 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||||| || || || || ||||| || ||||||||||| |||||||||||||| Sbjct 7540 GCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTGGCGGAATACCTTC 7481 Query 225615 CTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 ||||||||| || ||| || || ||| |||||| ||||| || | |||||| || || | Sbjct 7480 CTTGTCTTGAAT-TTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACCTCCAATG 7422 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | || ||||| ||||| | ||||| | ||| | |||||| Sbjct 7421 TAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATT 7381 >seq608441 Length=509 Score = 131 bits (144), Expect = 4e-25 Identities = 142/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 ||||| |||||||| |||| |||||||||| || || | || ||||| || || ||| Sbjct 507 AGAGTCGATTCTTTCTGGATGTTGTAATCGGATAATGTACGTCCGTCTTCAAGTTGTTTC 448 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||| || ||||| || || || || ||||| || || |||||||| || |||||| Sbjct 447 CCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAAT-TTTTGC 389 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||| ||||| || |||| ||| || ||||| || || || || || || | Sbjct 388 TTTTACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAG 329 Query 225693 AGTTTT 225698 |||||| Sbjct 328 AGTTTT 323 >seq162377 Length=1555 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| ||||| ||||| |||||||||||||| | |||||| || | ||| || Sbjct 113 ACGAAGACGCAGTACAAGATGGAGTGTGGATTCTTTTTGAATATTGTAGTCTGACAATGT 54 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGG 225602 | || ||||| |||||||| ||||| ||||| || |||||||| || || Sbjct 53 GCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGATCTGG 3 >seq69742 Length=401 Score = 100 bits (110), Expect = 7e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | |||| || ||| ||||||| |||| | || || ||||| ||| |||| || Sbjct 208 ATTAATTGGTGATGATCAAATTTACAATACTATTGTAACAGCACATGCTTTTATTATAAT 267 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | || || || |||| || || ||||| ||||||||| | | || || | Sbjct 268 TTTTTTTATAGTAATACCCATTATAATTGGAGGTTTTGGAAATTGACTAATCCCCCTA-T 326 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA-C 7714 | || || || ||||| || |||||| | | ||||||||||| |||||| || || | Sbjct 327 ATTAGGGGCCCCCGATATAGCATTTCCACGAATAAACAATATAAGATTTTGACTATTACC 386 Query 7715 CGCCTTCCTTAT 7726 | ||| |||||| Sbjct 387 CCCCTCCCTTAT 398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182249556361622