Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq51755 197 1e-45 >seq51755 Length=2487 Score = 197 bits (218), Expect = 1e-45 Identities = 628/963 (65%), Gaps = 13/963 (1%) Strand=Plus/Plus Query 109140 CGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTT 109199 ||| ||||| ||||||||||| ||||| | || || ||||||||| | ||| | Sbjct 993 CGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGACCGCATCCCGGT 1052 Query 109200 GCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAA 109259 || || | | |||||||| ||||| || || || || ||||| || || |||||||| Sbjct 1053 TCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGTGATGGCATCAA 1112 Query 109260 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCG 109319 ||| | ||| ||| ||||||||| | || ||||| || || ||| |||| || Sbjct 1113 TGACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGCGTTCATGCAGCGGCCG 1172 Query 109320 CGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGG 109379 || || ||||| || || || ||||| ||||| || |||| || || ||||| || Sbjct 1173 TGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAGCCTCAAAAGGG 1232 Query 109380 CGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATT 109439 | | | ||||||||||| |||||||| ||||| || || ||||| | ||| Sbjct 1233 ATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACA 1292 Query 109440 GGCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTT 109499 || ||| || | || || |||| || || || || ||||| ||| | || || || Sbjct 1293 AGCGAATACTGGTTTAAAGATCTTACCTTCGATTGGTGGCTGGACATTGGCCGATCCCTT 1352 Query 109500 TTATTTTATGCA-CGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTT 109558 | | || | || |||| | || | | | ||||||| || ||| || || Sbjct 1353 CT-TCTTCTTCACCGATAAAACCAAGCGTGACCGTTTCGTTGGCTCCGTGAAAGACTTCC 1411 Query 109559 TACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAGG 109618 | ||| ||||| ||||| || || ||||| |||||||||||||| || |||||||| | Sbjct 1412 TCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTTCCCTGGCGGCAAAG 1471 Query 109619 GTGCCAATCCGAGTCTCGG-CGACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTA 109677 | || || || ||||| | | || | || | | |||| || | | | Sbjct 1472 GCGCTAACCCTGACCTCGGTGGTCCTAAAGACGGAGATGTATACGTTCA----GCTCATG 1527 Query 109678 AAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAACAAAACGTACGAATTG 109737 ||||| || || |||||||| || || | | || | ||| ||||| || Sbjct 1528 AAAGAATTACGTCAAATGTTGGATGAGCTGGCGGCTGAGACTGGTAGAACTTACGAGCTG 1587 Query 109738 ACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGCGCAA 109797 || ||||| || ||||||| || || || | || || | ||| | || || Sbjct 1588 ACCTCTGCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTGAACTACAAGGAAGCCCAG 1647 Query 109798 CAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAAC-AC 109856 | || |||| | || || | |||| ||||| ||||| || || ||||| ||| || Sbjct 1648 AAGTACATGGATCATATTTTCGTCATGAGTTACGACTTCAAGGGTGCCTGGTCTAACGAC 1707 Query 109857 GGACT-TAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGTACA 109915 ||| | || |||| || || | ||||| || | |||| |||||| ||| |||| Sbjct 1708 --ACTCTCGGACATCAGACCGCTCTATACGCTCCGTCTTGGAGTCCAAAGGAAACTTACA 1765 Query 109916 CGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTATAA 109975 | ||||| | | ||| | ||| | | ||| || |||| ||||| | | Sbjct 1766 CCACCGACTTCGGTATCAGGTATCTGCTGACCCAAGGTGTTCCGCCCAAAAAGCTGGTTG 1825 Query 109976 TTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCG-TCGTGCACGCCGACGACGCGAAT 110034 | || || || |||||||| || |||||||| || | || || || | | |||| | Sbjct 1826 TCGGTGTTGCTATGTACGGACGTGGCTGGACAGGAGTTCATG-ACTACAATGACGACATA 1884 Query 110035 CCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTGGAC 110094 ||||| || | || || || || | || |||||| | ||||||||||||| Sbjct 1885 CCGTTCACCGGAGTAGCTAATGGCCCAGTTAAGGGAACTTGGCAGGACGGCGTGGTGGAT 1944 Query 110095 TAT 110097 ||| Sbjct 1945 TAT 1947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406301119675467