Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq237220 589 3e-163 seq562919 109 8e-19 >seq237220 Length=3575 Score = 589 bits (652), Expect = 3e-163 Identities = 1211/1784 (68%), Gaps = 34/1784 (2%) Strand=Plus/Minus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||| | |||||||| |||| | | || |||||||| || | ||| ||||| || Sbjct 2471 TTATCTACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCCT 2412 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||||| ||||| ||||| || ||||| || || | || ||| | || Sbjct 2411 GTTTTTAAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCGGC 2352 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || || | ||| ||||| | || ||||||||||| || |||||||| | |||||| ||| Sbjct 2351 TCAGCAACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCC 2292 Query 76953 ATTTTTATAATGGTCTTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATAT 77010 |||| ||| || | |||||| | ||||||||||| || || | | || | ||| Sbjct 2291 ATTTGTAT--TGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAA--GTCTCGTAT 2236 Query 77011 CATCTGGAAGG-----TTTG-TATTTTGAATGGAACCACCATCTGATATAATTGTATTCT 77064 |||| | | || | ||||||| || || ||| || |||||| ||| | Sbjct 2235 T-TCTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTT 2177 Query 77065 TTATATCATCATTCCACAATT-TCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 | || || |||| ||| || | | || ||||| | | | | ||| | ||| |||| || Sbjct 2176 TCATTTCCTCATCCCATAAATCTGCT-TCTGTCAGATCACGAAGCAAATGGTGATTTACA 2118 Query 77124 ATTTGAAATTCTCCAGACAATAC---TCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 | ||||||||||||||| || || ||| || ||||||||| || | ||||| Sbjct 2117 ACTTGAAATTCTCCAGATAAAACACGTCTTTGA---TAAATATTAGAAGTGAAAGGTTCA 2061 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | ||||||||| ||||| ||||| || || || || ||||| ||||| ||||| | ||| Sbjct 2060 AAAGATTCATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAA 2001 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | | ||| | || ||||| | || || | ||||| | | |||| ||||| | | Sbjct 2000 AGAGAATTGCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAA 1941 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 |||| || || ||| | ||||| |||| || || ||| ||| | ||| Sbjct 1940 TCTGTTGGATTTTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGG-GCTCCC 1882 Query 77361 TTA-TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCC 77419 || |||||||| || ||| | |||| |||| ||||||||| ||||| |||||||| Sbjct 1881 TTCGTATGTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCC 1822 Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGG 77479 || ||||| ||||| || || | | ||| || | ||||| ||| || | || Sbjct 1821 ATAGTAAATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGG 1762 Query 77480 ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 || | | | |||||| ||||| || | || ||||| || || |||||||||| ||| Sbjct 1761 TAAACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATG 1702 Query 77540 TCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATT 77599 || |||||| |||| ||||| |||| |||||||||||| | ||| || |||||||| Sbjct 1701 CCTAAAATTGGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATT 1642 Query 77600 GAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC--- 77656 | |||| || |||| || || |||| ||| ||||| | || || Sbjct 1641 CAAATTTTCTGTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAATTATATGTTTTGTT 1582 Query 77657 ATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716 ||| |||||||||| || | || ||||| |||| || || ||||| || |||| | | Sbjct 1581 ATCATTAACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCACTTCATCATC 1522 Query 77717 GTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTG 77776 | | ||| || ||| || || || || ||||||||||| || || || | ||||| Sbjct 1521 AGATGTAAATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTTT 1462 Query 77777 TTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAAT 77836 || || || ||| |||| ||||| || ||| | | || | ||||| || || || | Sbjct 1461 CTGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTAC 1402 Query 77837 CTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTA--TCGC 77894 || | ||| || || | |||||| | ||| ||| ||| | | || || || Sbjct 1401 TTGAGCTTCTATTATTGCTTTCCAAAGTACTTGTGCTCTTAC--TTGTTTAATAAATCTA 1344 Query 77895 CTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 | ||| ||||||| ||||| ||||||||| | ||||||| ||| | || Sbjct 1343 TTTTCTTTTTCATAGGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAAC 1284 Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 |||||||| || | || ||||| | | ||| | ||||| | | ||||| |||||| Sbjct 1283 CCAGGGCAATCGTGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATG 1224 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || |||||||||||||| | ||| ||| || || | || | |||||| ||||| Sbjct 1223 AAAAGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCA 1164 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 || || || || | ||| | || || | ||||| | |||||||||||||| ||| | | Sbjct 1163 GTGTTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCATGGTTCTAAATAGACT 1104 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | | ||||| || ||||||||||| ||||| | |||||| || || ||||| ||| Sbjct 1103 GCAAAAGCACCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAA 1044 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 |||| |||||||| | || ||| || || ||||||||||| | |||||| | || Sbjct 1043 ACTCGTAACATTGGTACAAGACCATTTGACACACCATTTGTTCCTGCTATATAAGTACCT 984 Query 78255 CTTGCGCGAAT--ATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312 | || | || | | ||||| | || ||||| ||||| |||||||| | || Sbjct 983 TTAGCCCTTATACAGTGGACATGGACA--CCAATTCCACCTGCAGATTTAGATATCAAAG 926 Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAA 78372 | || | || || |||||||| || || ||||| || ||||| |||| | |||| Sbjct 925 CACACTGCTTTAAGGTATCGTAAATCCCTTCTATGCTATCATCTTTCATAGCTATTAGAA 866 Query 78373 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCG 78432 |||| || | ||| | | |||| | || ||||| || || ||||| | Sbjct 865 AACATGACGATAGCTGAGGGCGTGGAGTTGCAGCGGAGAATAAGGTAGGGCTGGCATGAG 806 Query 78433 TAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGAT 78492 | || |||| |||||||||| ||| ||||| | || |||| || || || || Sbjct 805 TGAAATATTTCTCAGAAAGTAAATTATATGTATTTATGGCTGCATCAATATCTTCACCAT 746 Query 78493 GAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536 ||||||| | | || | |||||||||||| ||||||| |||| Sbjct 745 GAATTCCAATGGACACTCTCATCAACATATGTTGAGGTCGTTCA 702 >seq562919 Length=404 Score = 109 bits (120), Expect = 8e-19 Identities = 144/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 |||||||| || ||||| || || | ||||| ||||| || || | || ||| || Sbjct 230 AATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATGGAAGCAAAACTGCCC 171 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTAACTGGC 48307 || || ||||| |||||||| || ||||| || || ||| || || || | | | Sbjct 170 GAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCACCAAATGTTGCAGTC 111 Query 48308 TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 || ||| | |||||| || | ||||||||||| |||||||||||||| || | ||||| Sbjct 110 TTGCTTGCG-ATCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACACAGGGAAGAGTTTC 52 Query 48368 TATAGCATTAAAGAGAAA 48385 || |||||||| || || Sbjct 51 AATGGCATTAAACAGGAA 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 688825654172320