Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq237220 645 5e-180 seq562919 111 2e-19 seq601675 100 4e-16 >seq237220 Length=3575 Score = 645 bits (714), Expect = 5e-180 Identities = 1250/1825 (68%), Gaps = 40/1825 (2%) Strand=Plus/Minus Query 75332 ATTTCAGAATTACATACTACTGACTTTATTTTATTCTT-------ATCCAACGTGAACTG 75384 |||||||| |||| || || |||||||||| ||| ||| | || ||||| Sbjct 2513 ATTTCAGATTTAC-TATTAGGCACTTTATTTTTAACTTTAGATTTATCTACAGTAAACTG 2455 Query 75385 AATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACT 75444 || | | || ||||||||||| || | ||| ||||| || ||||||| ||||| | Sbjct 2454 TATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAACCCATTTT 2395 Query 75445 CCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATT 75504 |||| || ||||| || |||| || ||| |||| || || | ||| ||||| Sbjct 2394 CCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCGGCTCAGCAACATGTATATT 2335 Query 75505 CATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTT 75564 | || ||||||||||| || |||||||| | |||||| ||||||| ||| || | || Sbjct 2334 AAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTAT--TGTTGTT 2277 Query 75565 TTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG-- 75620 |||| | ||||||||||| || || | | | | || || || | | || Sbjct 2276 TTGACTGAAATTTCCCAAACTGTCTTATATAAGTCTCGTATTTCTGTAGGTATACTTTCG 2217 Query 75621 -TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAAT 75679 ||||||| || ||||| || |||||| ||| || || || |||| ||| || Sbjct 2216 ATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCATTTCCTCATCCCATAAA 2157 Query 75680 TTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAAT 75739 | | || || | | | | ||| | ||| |||| |||| ||||||||||||||| || Sbjct 2156 TCTGCTTCTGTCAGATCACGAAGCAAATGGTGATTTACAACTTGAAATTCTCCAGATAAA 2097 Query 75740 AC---TCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796 || |||| || ||||||||| || | ||||| | ||||||||| ||||| ||| Sbjct 2096 ACACGTCTTTGA---TAAATATTAGAAGTGAAAGGTTCAAAAGATTCATTATTTCCTAAA 2040 Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856 || || || ||||| ||||| ||||| ||||| | ||| | | ||| | || ||||| Sbjct 2039 ATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAATTGCGAAGGCCATGC 1980 Query 75857 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAG 75916 | || || | ||||| | | |||| ||||| | ||||| ||| || ||| Sbjct 1979 TTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTGGATTTTTATTCCAC 1920 Query 75917 AGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTA-TATGTTTCGTAAGTCCC 75975 | ||||| |||| || || || ||| | ||| || ||||||||||| || Sbjct 1919 ATTTCGTACTGTAATATACCTAGACTTGCAGG-GCTCCCTTCGTATGTTTCGTACACTCC 1861 Query 75976 GTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAAT 76035 | |||||| |||| ||| ||||| || ||||| || || || ||||| ||||| || || Sbjct 1860 ATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCATAGTAAATAGTTTCAAATAT 1801 Query 76036 CTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGC 76095 | | ||| || | ||||| |||| || |||| || | | | |||||| || Sbjct 1800 TTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGGTAAACGCATTAAAATAAAAGC 1741 Query 76096 ATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 ||| || || || ||||| || || |||||||||| ||| || |||||| ||| || Sbjct 1740 ATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCCTAAAATTGGATTTTTTTGC 1681 Query 76156 TTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT-CTGACAACTACTT 76214 ||| |||| ||| |||||||| | || || |||||||| | |||| ||| | | || Sbjct 1680 TTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTCAAATTTTCTGTTA-CAGTTT 1622 Query 76215 TAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCC---ATCTATCACAAACATATTAA 76271 || || || |||| ||| ||||| | || || ||| | ||||||||||| | Sbjct 1621 TAGTAACTTCTTTTAATTTCGCAAAATTATATGTTTTGTTATCATTAACAAACATATTTA 1562 Query 76272 GAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCT 76331 | || ||||| |||| || || || || || |||| | || | | ||| || ||| | Sbjct 1561 GGGCAATAGAAGCTAAGTTGCATACTGCCACTTCATCATCAGATGTAAATTCTACTATTT 1502 Query 76332 CCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC 76391 | ||||| || |||||||| || || || || | ||||| || || || ||| | |||| Sbjct 1501 CAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTTTCTGATTACTTTTTCTATTAC 1442 Query 76392 ATGAGTCCTTATAAAGAACAA--ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGA 76449 |||| || ||| || |||| | ||||| ||||| || | || | ||| || || | Sbjct 1441 ATGAATCTTTA--AATAACATGTATGGAGTACCAGTCTCTACTTGAGCTTCTATTATTGC 1384 Query 76450 TTTCCAGACGACTCTAGCTTTTA-TTATAGATTTGTATCGCTTCTCTCTTTCATATTGTG 76508 |||||| | ||| ||| ||| || | | | ||| || ||| ||||||| | Sbjct 1383 TTTCCAAAGTACTTGTGCTCTTACTTGTTTAATAA-ATCTATTTTCTTTTTCATAGGTTT 1325 Query 76509 TATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGAC 76568 |||||| ||||||||| | ||||||| ||| | || ||||| || || | |||| Sbjct 1324 CATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAACCCAGGGCAATCGTGAGGAC 1265 Query 76569 ACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATA 76628 |||| | | ||| | ||||| | | ||| | |||||| || |||||||||||||| | Sbjct 1264 ACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGAAAAGATCAGGTATCCACA 1205 Query 76629 GAGCAATAAATAGATCTCGGGTTC-TACGTTCTTCATTTCCTGTATTCTTTTTAAGATCT 76687 ||| ||| || || | || | ||| |||||| ||||| || || || || | |||| Sbjct 1204 ATGCATAAAAAAGTTCCCTGGCACGTAC-TTCTTCTTTTCCAGTGTTTTTCTTTAAATCT 1146 Query 76688 AGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGT 76747 | ||| || | ||||| | |||||||||||||| ||| | || | | |||| || || Sbjct 1145 AAGAATTCAAATATATCGGCATGCCATGGTTCTAAATAGACTGCAAAAGCACCAGGGCGC 1086 Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 ||||||||||| ||||| | |||||| || || ||||| ||||||| |||||||| | | Sbjct 1085 TTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAACTCGTAACATTGGTACA 1026 Query 76808 ATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT--ATTAC 76865 | || || || |||||||||||| | |||||| | || || | || | | Sbjct 1025 AGACCATTTGACACACCATTTGTTCCTGCTATATAAGTACCTTTAGCCCTTATACAGTGG 966 Query 76866 TAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGT 76925 || || | || ||||| ||||| |||||| || | |||||| | || || || | Sbjct 965 ACATGGACA--CCAATTCCACCTGCAGATTTAGATATCAAAGCACACTGCTTTAAGGTAT 908 Query 76926 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGAT 76985 | || || || ||||| |||||||| |||| | |||||||| || | ||| Sbjct 907 CGTAAATCCCTTCTATGCTATCATCTTTCATAGCTATTAGAAAACATGACGATAGCTGAG 848 Query 76986 GATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAA 77045 | | |||| | || || || ||||| ||||||||||| |||| ||||||| Sbjct 847 GGCGTGGAGTTGCAGCGGAGAATAAGGTAGGGCTGGCATGAGTGAAATATTTCTCAGAAA 788 Query 77046 GTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACAC 77105 ||| ||| ||||| | || |||| || ||||| ||||||||| | | || | Sbjct 787 GTAAATTATATGTATTTATGGCTGCATCAATATCTTCACCATGAATTCCAATGGACACTC 728 Query 77106 GCATCAACATATGCTGAGGTCGTTC 77130 |||||||||||| ||||||||||| Sbjct 727 TCATCAACATATGTTGAGGTCGTTC 703 >seq562919 Length=404 Score = 111 bits (122), Expect = 2e-19 Identities = 144/197 (73%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 |||||||| || ||||| || || | |||||| ||||| || || | || ||| || Sbjct 230 AATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATGGAAGCAAAACTGCCC 171 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCA-TC 46799 || || ||||| ||||||||||| || || || |||| ||| || || | | ||| || Sbjct 170 GAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCACCAAATGTTGCAGTC 111 Query 46800 AT--TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 | | |||||| | ||||||||||||| || ||||||||||| || | ||||| Sbjct 110 TTGCTTGCGATCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACACAGGGAAGAGTTTCA 51 Query 46858 ATAGCATTAAAGAGAAA 46874 || |||||||| || || Sbjct 50 ATGGCATTAAACAGGAA 34 >seq601675 Length=487 Score = 100 bits (110), Expect = 4e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 ||||||||||| | ||| ||||||||| ||||||| ||||| || || ||||| || Sbjct 369 TATGTATCTATAAGAAGGGAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAG 310 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTC 47019 || || ||||||||||| ||||| | || || ||| |||||| ||| || || Sbjct 309 CCATAGAAACATCTTGCCTCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTT 250 Query 47020 TCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 ||||| || || || || ||| ||||| ||||| | ||||| || || || Sbjct 249 TCATTTACAATGCCGTCGGAAGCCGCAAAGAATGCAAGAACATGCTTGATGAA 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706937614676160