Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq51755 219 3e-52 seq255931 120 2e-22 seq26808 105 5e-18 >seq51755 Length=2487 Score = 219 bits (242), Expect = 3e-52 Identities = 782/1211 (65%), Gaps = 51/1211 (4%) Strand=Plus/Minus Query 5737 TTACCTA-ACCCTTGATTCATGGAGTTTAACAAGTCGCCGTTGTCCGCGTCGATTTCCCA 5795 || |||| |||| | |||||| | ||||| | || || ||||| ||||| |||||||| Sbjct 2183 TTCCCTAGACCCAT-ATTCATTGCGTTTAGGATATCCCCATTGTCAGCGTCTATTTCCCA 2125 Query 5796 TCCAAATAGACCCCCCAGCCCCTTTTGGATGACATATTTTCCCTTGGCCGTCACGGACCT 5855 | || || || || ||| || | | || ||||| ||||| | | || ||||| Sbjct 2124 AGCGAACAGTCCACCAAGCTTATTGTTCCTCACGTATTTCCCCTTCTCAATAACCGACCT 2065 Query 5856 CTCGTCGTCGTAGGTGACGAGATCGTCGTTGTGGTA--------CACGTAGGGCGCTTGC 5907 | || || ||||| || || ||| || |||||| |||||| || ||||| Sbjct 2064 TGCATCATCATAGGTCACCAGGTCGCCG--GTGGTAGGATTCCACACGTACGGAGCTTGG 2007 Query 5908 GCCACTCCGTCGTAATT-------CGGGTT------GGGATACCGGTTCGTGATGTCTTT 5954 | | | || |||| | ||| | ||| || |||||||| || | Sbjct 2006 GATATTTTATCATAATAGTACTGCCATGTTCCTGAAGTGATGCCA-TTCGTGATCTCCCT 1948 Query 5955 GTAGTCCACGACACCGTTTTCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAA 6014 || ||||| || |||| | ||| | ||||| || || || | || || ||||| Sbjct 1947 ATAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACTCCGGTGAA 1888 Query 6015 GGGATTGTTGTTGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACGCC 6074 || ||| || || || || | ||| ||| || | |||||||| || || || Sbjct 1887 CGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAACACC 1828 Query 6075 CACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGCGAACGCGGT 6134 || |||| || || || || | || | ||||| || |||| |||| Sbjct 1827 GACAACCAGCTTTTTGGGCGGAACACCTTGGGTCAGCAGATACCTGATACCGAAGTCGGT 1768 Query 6135 GGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGATC 6194 |||||| |||| | || |||| | || ||||| || | ||||| |||| ||| Sbjct 1767 GGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAGAGT 1708 Query 6195 GGTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATACTC 6254 | |||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| Sbjct 1707 GTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTACTT 1648 Query 6255 CTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTTGT 6314 ||| | | ||| | ||||| | || ||||| | || | |||||||| || Sbjct 1647 CTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGAGGT 1588 Query 6315 GAGCAGATACTTGCGACCCGTGCGAGTCTCCAGACCGTCCAGCATG-GACCTGAGGTCGC 6373 ||| || | | ||| || || | |||| | |||| ||| ||| | | || Sbjct 1587 CAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAAT-TCTT 1529 Query 6374 CCAAGAGCGCTTGATAGGTGACGCCGTCGACTGT--GACGTTTCCTAAGGCAGGATTGGC 6431 || |||| ||| | || | || || | ||| || | | |||| || || Sbjct 1528 TCATGAGC---TGAACGTATACATCTCCGTCTTTAGGACCA--CCGAGGTCAGGGTTAGC 1474 Query 6432 TCCCTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTC 6491 || ||||| || || || |||||||| || || || || |||||||||||||| |||| Sbjct 1473 GCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTG 1414 Query 6492 CAGAAATTCTTCGACGCTCTCTACGAA-----CAC-CTTTCTTTTAATCGTGTCGTTGAG 6545 || || |||| ||| | ||||| ||| ||| ||||| ||| ||| Sbjct 1413 GAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTA------TCGGTGAA 1360 Query 6546 CTGGTAAAAGGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGATGCGG 6605 | | ||||||||| || ||||| ||||| ||||| || | ||| | | | | Sbjct 1359 GAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGT 1300 Query 6606 ATTGTGTT--TTCGTATGGCCATAAGCTGACCGAAATTACCCTTGTACATTTCCGAGTAG 6663 ||| || ||| || ||| ||||| ||||| ||||| ||||| || || Sbjct 1299 ATTCGCTTGTTTCAACTG--CATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAG 1242 Query 6664 GCCTCGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTTG 6723 | | | ||||| || || || || || || |||| |||||| || || |||||| Sbjct 1241 GACGATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTG 1182 Query 6724 AAGTCGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTC 6783 ||||| || || || ||| || ||||||| |||| || ||| | | |||| Sbjct 1181 AAGTCTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTTC 1122 Query 6784 AGAGCGTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGTG 6843 | | ||| ||||| ||||| || || || || || | ||| ||||| |||| ||| || Sbjct 1121 AAACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTC 1062 Query 6844 AGATTGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAACACCCCACTCCACG 6903 || || |||| ||||| | ||| |||| |||| ||| || || ||||| || ||| Sbjct 1061 AGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACG 1002 Query 6904 AAGTAAGCTCC 6914 ||||| || || Sbjct 1001 AAGTAGGCGCC 991 >seq255931 Length=537 Score = 120 bits (132), Expect = 2e-22 Identities = 317/478 (66%), Gaps = 21/478 (4%) Strand=Plus/Minus Query 6125 CGAACGCGGTGGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCA 6184 |||| |||||||||| |||| | || |||| | || |||||||| | ||||| Sbjct 528 CGAAGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGT 469 Query 6185 GTCCCAGATCGGTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGAT 6244 |||| ||| | |||||||||||| |||||||| ||||| |||||||||||||||| | Sbjct 468 GTCCGAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGT 409 Query 6245 CCAGATACTCCTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGA 6304 ||| |||| ||| | | ||| | ||||| | || ||||| | || |||||| Sbjct 408 CCATGTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGA 349 Query 6305 TGGCGCTTGTGAGCAGATACTTGCGACCCGTGCGAGTCTCCAGACCGTCCAGCA-TGGAC 6363 |||| || ||| || | | ||| || || | |||| | |||| || | ||| Sbjct 348 TGGCAGAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGAC 289 Query 6364 CTGAGGTCGCCCAAGAGCGCTTGATAGGTGACGCCGTCGACTGT--GACGTTTCCTAAGG 6421 | | || || |||| ||| | || | || || | ||| || | | Sbjct 288 GT-AATTCCTTCATGAGC---TGAACGTATACATCTCCGTCTTTAGGAC--CACCGAGGT 235 Query 6422 CAGGATTGGCTCCCTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACT 6481 |||| || || || ||||| || || || ||||| || || || || || |||||||||| Sbjct 234 CAGGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACT 175 Query 6482 TCCAAGTTTCCAGAAATTCTTCGACGCTCTCTACGAA-----CAC-CTTTCTTTTAATCG 6535 |||| |||| || || |||| ||| | ||||| ||| ||| ||||| Sbjct 174 TCCAGGTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTA---- 119 Query 6536 TGTCGTTGAGCTGGTAAAAGGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGAT 6593 ||| ||| | | ||||||||| || ||||| ||||| ||||| || | ||| Sbjct 118 --TCGGTGAAGAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGAT 63 >seq26808 Length=8541 Score = 105 bits (116), Expect = 5e-18 Identities = 170/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| |||||||| || | ||||| ||| || || ||||| || || || | Sbjct 7608 CCTCCTCTAAGTCTCAAAACTAAATGAAGTGTGGATTCTTTCTGGATATTATAGTCTGAA 7549 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || | || || ||||||||||| | ||| || || |||| || Sbjct 7548 AGAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGGTCTGGCGGA 7489 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||||||||| || || || || | || | || ||||||| | ||||||| Sbjct 7488 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACC 7429 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATGAAA 44350 |||| ||||| ||||| ||||| ||||| || ||||| || ||||| ||| | | ||| Sbjct 7428 TCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATCTGCATTGTGTTACT-AAA 7370 Query 44351 ATA 44353 ||| Sbjct 7369 ATA 7367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357038072943321