Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq26808 161 2e-34 seq608441 143 6e-29 seq10425 109 1e-18 seq219547 104 6e-17 >seq26808 Length=8541 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || || || || | ||||||||| || ||| Sbjct 7385 CAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTCCGAC 7444 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| || ||||| ||||| ||||| || || || ||||| ||| Sbjct 7445 ACTATCGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCGCCAGACCAACAA 7504 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||| | |||||||| | |||||| | || ||||| || Sbjct 7505 CGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAATATC 7564 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| ||||| ||| | ||||||||||| ||| Sbjct 7565 CAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGA 7603 >seq608441 Length=509 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||||||||| || ||||| || || | || || ||| ||| || Sbjct 311 CAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCCTCTGAT 370 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| ||| ||||| |||||||| || || ||||| || ||||| Sbjct 371 ACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAGCAG 430 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || ||||| || ||||| || ||||| ||| | || | ||||||| ||| || Sbjct 431 CGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCCGATTACAACATC 490 Query 178104 CAAAAAGAATCAACACTGC 178122 || |||||||| || |||| Sbjct 491 CAGAAAGAATCGACTCTGC 509 >seq10425 Length=666 Score = 109 bits (120), Expect = 1e-18 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || |||||||| ||||| || ||||| Sbjct 335 CAAATTTTCGTAAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCGTCAGAT 394 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 ||||||||||| || ||| ||||||||| |||||||| ||||||||||| Sbjct 395 ACCATCGAGAATGTGAAAGCAAAGATTCAAGACAAAGAGGGAATCCCTCC 444 >seq219547 Length=1641 Score = 104 bits (114), Expect = 6e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || |||||||| ||||| || ||||| Sbjct 1319 CAAATTTTCGTAAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCGTCAGAT 1260 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 ||||||||||| || ||| |||||||| |||||||| ||||||||||| Sbjct 1259 ACCATCGAGAATGTGAAAGCTAAGATTCAAGACAAAGAGGGAATCCCTCC 1210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1193352993346122