Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq741 122 6e-23 >seq741 Length=16203812 Score = 122 bits (134), Expect = 6e-23 Identities = 171/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| ||||||||||||||| || | || ||||| ||||| || |||||||| ||||| Sbjct 5508620 AGTTACATGAGCAATCATGTGTGTGAGCAGCGAATAACTAGCTATATTAAATGGAACTCC 5508561 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 ||| ||||| ||||| |||||| |||| || || | || |||||| ||||| Sbjct 5508560 TAAGCCCATGTCAGCACTTCTTTGGTACAACAAGCAAGATAATTTCCCATCAGCCACATA 5508501 Query 101872 AAATTGACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCC 101930 ||||| ||| ||| ||||| || || | |||| || || ||||||| ||||| Sbjct 5508500 GAATTGTGCTAA-ACAGTGACATGGTGGTAGTGCCATCTTCTTAAGGTCTGAAGAATTCC 5508442 Query 101931 AAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAA 101985 | ||||| || ||||| ||||| |||| || ||||| |||| || |||| || Sbjct 5508441 ATGCACATATCAACATTCTTCTGTCTG-CTGGATTGTTCCTATAATA-CAATTAA 5508389 Score = 104 bits (114), Expect = 2e-17 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATA-TAATGTC 101592 || || ||||| | ||||| |||| |||| ||||| || || | || ||||| | | ||| Sbjct 5509493 TATACTGCCATTTCCATTTCAATTTTAGGATGTGGTTTGTAATCTT-TAATAATGAAGTC 5509435 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAA-TCTAAGTGTTGGAAACG 101651 || ||| || ||||||||| || || ||||||||||| ||||| |||||||||| Sbjct 5509434 CTCATATTTGAAATCATCAATGGATTCAATTTTTCTAGCAAATTCTAA-TGTTGGAAACT 5509376 Query 101652 GTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAG 101711 || | || || | | ||| || || | | ||||| |||| || ||| | ||| | Sbjct 5509375 GTTTTGGTTCTCTCTGTAGCTGTATCTTTAATGGTTCAATATGATTTAGATACACGTGGG 5509316 Query 101712 CATCTCCTATAGTATGGATAAACTCTCCAG 101741 ||||||| | || || ||||| ||||||| Sbjct 5509315 TATCTCCTGTTGTGTGTATAAATTCTCCAG 5509286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361059843320213