Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq1767 1297 0.0 seq1770 1177 0.0 seq18029 1097 0.0 seq2164 233 6e-57 >seq1767 Length=9911 Score = 1297 bits (1438), Expect = 0.0 Identities = 724/727 (99%), Gaps = 0/727 (0%) Strand=Plus/Plus Query 23149 ACTAACTCTTCTGTCGAAGTGATATTTTTAGGCTTATCTACCAGTTTTAGACGCTCTTTA 23208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTAACTCTTCTGTCGAAGTGATATTTTTAGGCTTATCTACCAGTTTTAGACGCTCTTTA 60 Query 23209 ATATCTTCAGGAATTATTTTATTGTCATATTGTATCATGCTAAATGACAATTTGCTTATG 23268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATCTTCAGGAATTATTTTATTGTCATATTGTATCATGCTAAATGACAATTTGCTTATG 120 Query 23269 GAGTAATCTTTTAATTTTAAATAAGTTATTCTCCTGGCTTCATCAAATAAAGAGTCGAAT 23328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAGTAATCTTTTAATTTTAAATAAGTTATTCTCCTGGCTTCATCAAATAAAGAGTCGAAT 180 Query 23329 GATGTTGGCGAAATCACATCGTCACCCATTGGATTGTTTATTTGTATGCCAAGAGAGTTA 23388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GATGTTGGCGAAATCACATCGTCACCCATTGGATTGTTTATTTGTATGCCAAGAGAGTTA 240 Query 23389 CAGCAGTTATACATTCTGCCATAGATTATAGCTAAGGCATGTAATAATTCGTAATCTTTT 23448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CAGCAGTTATACATTCTGCCATAGATTATAGCTAAGGCATGTAATAATTCGTAATCTTTT 300 Query 23449 AGCGTATTAGCGACCCATCGTCTTTCTGATTTAATAATAGATGATTCAGTTAAATATGAA 23508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGCGTATTAGCGACCCATCGTCTTTCTGATTTAATAATAGATGATTCAGTTAAATATGAA 360 Query 23509 GGTAATTTCTTTTGTGCAAGTCTGACTAACTTTTTTATACCAATGTTTAACATACTTTCA 23568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GGTAATTTCTTTTGTGCAAGTCTGACTAACTTTTTTATACCAATGTTTAACATACTTTCA 420 Query 23569 TTTGTAATAAACTCAATGTCATTTTCTTCAATGTAAGATGAAATAAGAGTAGCCTTTGCC 23628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTTGTAATAAACTCAATGTCATTTTCTTCAATGTAAGATGAAATAAGAGTAGCCTTTGCC 480 Query 23629 TCGCTATACATTTCTAAATCGCCTTGTTTTTCTATCGTATTGCGAGAATTTTTAGCCCAA 23688 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCGCTATACATTTCTAAATCGCCTTGTTTTTCTATCGTATTGCGAGAATTTTTAGCCCAA 540 Query 23689 GCCATTAATGGATCATTTTTCCATTTTTCAATAACATTATTGTTATACCAAATGTCATAT 23748 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCCATTAATGGATCATTTTTCCATTTTTCAATAACATTATTGTTATACCAAATGTCATAT 600 Query 23749 CCTATAATCTGGtttttgtttttttGAATAATAAATGTTACTGTTCTTGCGGTTTGGAGG 23808 ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| Sbjct 601 CCTATAATCTGGTTTATGTCTTCTTGAATAATAAATGTTACTGTTCTTGCGGTTTGGAGG 660 Query 23809 AATTGATTCAAATTCAAGCGAAATAATTCAGGGTCAAAATATGTATCAATGCAGCATTTG 23868 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AATTGATTCAAATTCAAGCGAAATAATTCAGGGTCAAAATATGTATCAATGCAGCATTTG 720 Query 23869 AGCAAGT 23875 ||||||| Sbjct 721 AGCAAGT 727 Score = 1068 bits (1184), Expect = 0.0 Identities = 606/610 (99%), Gaps = 4/610 (1%) Strand=Plus/Plus Query 24551 ATACATAACTCTTTTCCAATAATTGGGGAAGTCATTCAAATCTATAATAGGTTTCAGATT 24610 |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| Sbjct 9306 ATACATAACTCTTTTCCAATAATTGGGGAA-TCATTCAA-TCTATAATAG-TTTCAGATT 9362 Query 24611 TGCTTCAATAAATTCTGACTGTAGCTGCTGAAACGTTGCGGTTGAACTATATTTCCTTAT 24670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9363 TGCTTCAATAAATTCTGACTGTAGCTGCTGAAACGTTGCGGTTGAACTATATTTCCTTAT 9422 Query 24671 AACTTTTACGAAAGAGTTTCTTTGAGTAATCACTTCACTCAAGTGCTTCCCTGCCTCCAA 24730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9423 AACTTTTACGAAAGAGTTTCTTTGAGTAATCACTTCACTCAAGTGCTTCCCTGCCTCCAA 9482 Query 24731 ACGATACCTGTTAGCAATATTTAATAGCTTGAAATGATGAAGAGCTCTGTGTTTGTCTTC 24790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9483 ACGATACCTGTTAGCAATATTTAATAGCTTGAAATGATGAAGAGCTCTGTGTTTGTCTTC 9542 Query 24791 CTGCCTCCAGTTCGCCGGGCATTCAACATAAAAACTGATAGCACCCGGAGTTCCGGAAAC 24850 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9543 CTGCCTCCAGTTCGCCGGGCATTCAACATAAAAACTGATAGCACCCGGAGTTCCGGAAAC 9602 Query 24851 GAAATTTGCATATACCCATTGCTCACGaaaaaaaaTGTCCTTGTCGATATAGGGATGAAT 24910 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9603 GAAATTTGCATATACCCATTGCTCACGAAAAAAAATGTCCTTGTCGATATAGGGATGAAT 9662 Query 24911 CGCTTGGTGTACCTCATCTACTGCGAAAACTTGACCTTTCTCTCCCATATTGCAGTCGCG 24970 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9663 CGCTTGGTGTACCTCATCTACTGCGAAAACTTGACCTTTCTCTCCCATATTGCAGTCGCG 9722 Query 24971 GCACGATGGAACTAAATTAATAGGCATCACCGAAAATTCAGGATAATGTGCAATAGGAAG 25030 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9723 GCACGATGGAACTAAATTAATAGGCATCACCGAAAATTCAGGATAATGTGCAATAGGAAG 9782 Query 25031 AAAATGATCTATATTTTTTGTCTGTCCTATATCACCACAAAATGGACATTTTTCACCTGA 25090 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9783 AAAATGATCTATATTTTTTGTCTGTCCTATATCACCACAAAATGGACATTTTTCACCTGA 9842 Query 25091 TGAAACAAGCATGTCATCGTAATATGTTCTAGCGGGTTTGTTTTTATCTCGGAGATTATT 25150 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 9843 TGAAACAAGCATGTCATCGTAATATGTTCTAGCGGGTTTGTTTTTATCTCGGAG-TTATT 9901 Query 25151 TTCATAAAGC 25160 |||||||||| Sbjct 9902 TTCATAAAGC 9911 >seq1770 Length=9848 Score = 1177 bits (1304), Expect = 0.0 Identities = 660/665 (99%), Gaps = 0/665 (0%) Strand=Plus/Plus Query 25162 TTTCTAATTTAACCTTTGTCAGGTTACCAACTACTAAGGTTGTAGGCTCAAGAGGGTGTG 25221 ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||| Sbjct 5 TTTCTAATTTAGCCGTTATCAGGTTACCAACTACTAAGGTTGTAGGCTCAAGAGGGTGTG 64 Query 25222 TCCTGTCGTAGGTAAATAACTGACCTGTCGAGCTTAATATTCTATATTGTTGTTCTTTCT 25281 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 65 TCCTGTCGTAGGTAAATAACTGACCTGTCGAGCTTAATATACTATATTGTTGTTCTTTCT 124 Query 25282 GCAAAAAAGTGGGGAAGTGAGTAATGAAATTATTTCTAACATTTATCTGCATCATACCTT 25341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 GCAAAAAAGTGGGGAAGTGAGTAATGAAATTATTTCTAACATTTATCTGCATCATACCTT 184 Query 25342 CCGAGCATTTATTAAGCATTTCGCTATAAGTTCTCGCTGGAAGAGGTAGTTTTTTCATTG 25401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 CCGAGCATTTATTAAGCATTTCGCTATAAGTTCTCGCTGGAAGAGGTAGTTTTTTCATTG 244 Query 25402 TACTTTACCTTCATCTCTGTTCATTATCATCGCTTTTAAAACGGTTCGACCTTCTAATCC 25461 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 245 TACTTTACCTTCATCTCTGTTCATTATCATCGCTTTTATAACGGTTCGACCTTCTAATCC 304 Query 25462 TATCTGACCATTATAATTTTTTAGAATGGTTTCATAAGAAAGCTCTGAATCAACGGACTG 25521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 TATCTGACCATTATAATTTTTTAGAATGGTTTCATAAGAAAGCTCTGAATCAACGGACTG 364 Query 25522 CGATAATAAGTGGTGGTATCCAGAATTTGTCACTTCAAGTAAAAACACCTCACGAGTTAA 25581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 CGATAATAAGTGGTGGTATCCAGAATTTGTCACTTCAAGTAAAAACACCTCACGAGTTAA 424 Query 25582 AACACCTAAGTTCTCACCGAATGTCTCAATATCCGGACGGATAATATTTATTGCTTCTCT 25641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 AACACCTAAGTTCTCACCGAATGTCTCAATATCCGGACGGATAATATTTATTGCTTCTCT 484 Query 25642 TGACCGTAGGACTTTCCACATGCAGGATTTTGGAACCTCTTGCAGTACTACTGGGGAATG 25701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 TGACCGTAGGACTTTCCACATGCAGGATTTTGGAACCTCTTGCAGTACTACTGGGGAATG 544 Query 25702 AGTTGCAATTATTGCTACACCATTGCGTGCATCGAGTAAGTCGCTTAATGTTCGTAAAAA 25761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 AGTTGCAATTATTGCTACACCATTGCGTGCATCGAGTAAGTCGCTTAATGTTCGTAAAAA 604 Query 25762 AGCAGAGAGCAAAGGTGGATGCAGATGAACCTCTGGTTCATCGAATAAAACTAATGACTT 25821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 AGCAGAGAGCAAAGGTGGATGCAGATGAACCTCTGGTTCATCGAATAAAACTAATGACTT 664 Query 25822 TTCGC 25826 ||||| Sbjct 665 TTCGC 669 Score = 1162 bits (1288), Expect = 0.0 Identities = 647/649 (99%), Gaps = 0/649 (0%) Strand=Plus/Plus Query 26835 CACCATGCTCATCAAAGACAGTAAGATAAAACATTGTAACAAAGGAATAGTCATTCCAAC 26894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9199 CACCATGCTCATCAAAGACAGTAAGATAAAACATTGTAACAAAGGAATAGTCATTCCAAC 9258 Query 26895 CATCTGCTCGTAGGAATGCCTTAtttttttCTACTGCAGGAATATACCCGCCTCTTTCAA 26954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9259 CATCTGCTCGTAGGAATGCCTTATTTTTTTCTACTGCAGGAATATACCCGCCTCTTTCAA 9318 Query 26955 TAACACTAAACTCCAACATATAGTAACCCTTAATTTTATTAAAATAACCGCAATTTATTT 27014 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 9319 TAACACTAAACTCCAACATATAGTAACCCGTAATTTTATTAAAATAACCGCAATTTATTT 9378 Query 27015 GGCGGCAACACAGGATCTCTCTTTTAAGTTACTCTCTATTACATACGTTTTCCATCTAAA 27074 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 9379 GGCGGCAACACAGGATCTCTCTTTTAAGTTACTCTCTATGACATACGTTTTCCATCTAAA 9438 Query 27075 AATTAGTAGTATTGAACTTAACGGGGCATCGTATTGTAGTTTTCCATATTTAGCTTTCTG 27134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9439 AATTAGTAGTATTGAACTTAACGGGGCATCGTATTGTAGTTTTCCATATTTAGCTTTCTG 9498 Query 27135 CTTCCTTTTGGATAACCCACTGTTATTCATGTTGCATGGTGCACTGTTTATACCAACGAT 27194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9499 CTTCCTTTTGGATAACCCACTGTTATTCATGTTGCATGGTGCACTGTTTATACCAACGAT 9558 Query 27195 ATAGTCTATTAATGCATATATAGTATCGCCGAACGATTAGCTCTTCAGGCTTCTGAAGAA 27254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9559 ATAGTCTATTAATGCATATATAGTATCGCCGAACGATTAGCTCTTCAGGCTTCTGAAGAA 9618 Query 27255 GCGTTTCAAGTACTAATAAGCCGATAGATAGCCACGGACTTCGTAGCCATTTTTCATAAG 27314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9619 GCGTTTCAAGTACTAATAAGCCGATAGATAGCCACGGACTTCGTAGCCATTTTTCATAAG 9678 Query 27315 TGTTAACTTCCGCTCCTCGCTCATAACAGACATTCACTACAGTTATGGCGGAAAGGTATG 27374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9679 TGTTAACTTCCGCTCCTCGCTCATAACAGACATTCACTACAGTTATGGCGGAAAGGTATG 9738 Query 27375 CATGCTGGGTGTGGGGAAGTCGTGAAAGAAAAGAAGTCAGCTGCGTCGTTTGACATCACT 27434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9739 CATGCTGGGTGTGGGGAAGTCGTGAAAGAAAAGAAGTCAGCTGCGTCGTTTGACATCACT 9798 Query 27435 GCTATCTTCTTACTGGTTATGCAGGTCGTAGTGGGTGGCACACAAAGCT 27483 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9799 GCTATCTTCTTACTGGTTATGCAGGTCGTAGTGGGTGGCACACAAAGCT 9847 >seq18029 Length=622 Score = 1097 bits (1216), Expect = 0.0 Identities = 618/623 (99%), Gaps = 1/623 (0%) Strand=Plus/Plus Query 37586 GCTCAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTTC 37645 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 GCTTAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGG-TACTCATACTCACTTC 59 Query 37646 TAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAG 37705 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 60 TAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATATCTCTGGCGATTGAAG 119 Query 37706 GGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCAT 37765 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 120 GGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCAT 179 Query 37766 TTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGT 37825 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGT 239 Query 37826 CTGCGACAGATTCCTGGGATAAGCCAAGTTCAtttttctttttttCATAAATTGCTTTAA 37885 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CTGCGACAGATTCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTAA 299 Query 37886 GGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGTT 37945 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGTT 359 Query 37946 AAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTG 38005 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTG 419 Query 38006 GCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAG 38065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAG 479 Query 38066 ATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGCG 38125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGCG 539 Query 38126 CGATCAACAAGGCCATTCATGCAGGCCGAAAGAtttttttAACTATAAACGCTGATGGAA 38185 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CGATCAACAAGGCCCTTCATGCAGGCCGAAAGATTTTTTTAACTATAAACGCTGATGGAA 599 Query 38186 GCGTTTATGCGGAAGAGGTAAAG 38208 ||||||||||||||||||||||| Sbjct 600 GCGTTTATGCGGAAGAGGTAAAG 622 >seq2164 Length=289 Score = 233 bits (258), Expect = 6e-57 Identities = 129/129 (100%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37460 AGCTTGGCTTGGAGCCTGTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATG 37519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 AGCTTGGCTTGGAGCCTGTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATG 61 Query 37520 CAGAATCACTGGCTTTTTTGGTTGTGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGG 37579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 CAGAATCACTGGCTTTTTTGGTTGTGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGG 121 Query 37580 TTCTAAGCT 37588 ||||||||| Sbjct 122 TTCTAAGCT 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155004757148384