Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq466 583 1e-161 seq483 127 2e-24 >seq466 Length=1632705 Score = 583 bits (646), Expect = 1e-161 Identities = 1209/1784 (68%), Gaps = 34/1784 (2%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 || |||| || ||||| |||| | || ||| ||||| || || | ||| ||||| || Sbjct 916827 TTATCCACAGTAAATTGTATGGCATTGGCTGCCGGTTTTGTTCGCAAATAATACATCCCT 916886 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||||| ||| | ||||| || ||||| ||| |||| ||| || |||| Sbjct 916887 GTTTTTAAACCCATTTTCCATGAATAGAAATGAATAGAAGTTAATTTTCCGTAGTTCGGT 916946 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || | || ||||| | ||||||||||||||| || || ||||| | || |||||| Sbjct 916947 TCAGCAACGTGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCC 917006 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 53037 |||| ||| | || || || ||||||||||| || ||||| || || |||| | || Sbjct 917007 ATTTGTATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCCCTTATT-TC 917065 Query 53038 TTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094 | || | || |||| || ||||||||| || ||||| ||| || || Sbjct 917066 TGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCAT 917125 Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 53154 || |||| |||||| | | || || ||| | | ||| | ||| |||| || ||||| Sbjct 917126 TTCCTCATCCCATAAATCTGCTTCTGTCAAATCACGAAGTAAATGATGATTTACAACTTG 917185 Query 53155 AAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 53211 |||||||||||| || || ||| || ||||||||| || | || || | ||| Sbjct 917186 AAATTCTCCAGATAAAACACGTCTTTGA---TAAATATTAGAAGTGAAGGGCTCAAAAGA 917242 Query 53212 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 53271 ||||||||||| ||||| ||||| ||||| ||||| ||||| || || ||||| | | Sbjct 917243 TTCATTATTTCCTAAAATCTGAGCTGTTGAGGCAGTGGGCATTGGGGCTACCAAAAGAGA 917302 Query 53272 ATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329 ||| | |||||| ||| | | || || ||||||| || ||| | ||| | ||| Sbjct 917303 ATTACGAAGACC--ATGCTTGGCAATGTTTTCTTTTAAAGCAGTCCAGTCCCATAAATCT 917360 Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 53389 | || |||| || || ||| || ||||| | Sbjct 917361 GTTGGATTTTTATTCCACATTTCGTACTGTAATATGCCTCGACTTGCAGGGCATCCTTCG 917420 Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 ||||| || || ||| | ||| || |||||||||||||| ||||||| ||| || || Sbjct 917421 TATGTTTCATACACTCCATACTTTTCTGCTAGTTCACAACTTGCCTCTAGTGCTCCATAG 917480 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTATCAAATGGATA 53508 ||||| ||||| || || | | ||||| || | | ||||| | || || | || | Sbjct 917481 TAAATAGTTTCAAATATTTGTTGATTTA-ATTTAATAGCTTCTGGACTTTCGTAAGGTAA 917539 Query 53509 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568 | | | |||||| || || || | ||||||||||| || || |||||||||||||| Sbjct 917540 ACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCTATGTCT 917599 Query 53569 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 53628 |||||| ||| ||||| |||| ||| |||||||| | ||| || |||||||| | Sbjct 917600 AAGATTAGATTTTTTTGCTTCCGGAACAGGGTAATAATTTACATCAATGATTTTATTCAA 917659 Query 53629 GTTT-CTGACAATTACTTTGACCA-CATCCTTCAGTTTGAGAAAATCAAAT----TGTCC 53682 ||| ||| | || ||| | | | || || | ||| ||| | | || ||| Sbjct 917660 ATTTTCTGTTA--TAGTTTTAGTAACTTCTTTTAATTTCTTAAAGTTATATGTTTTGTT- 917716 Query 53683 ATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 ||| |||||||| || | || ||||| || | || || || || || |||| | | Sbjct 917717 ATCATCAACAAACATATTTAGCGCTATAGAGGCTAAGTTGCATACTGCCACTTCATCATC 917776 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 | | ||||| | ||| |||||||| || |||||||| || ||||| |||||||||| Sbjct 917777 AGATGTATATTCAACTATTTCAGTGCACAGGTTACTACATTTTATGGTACCTAAATTTTT 917836 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 |||||||| ||| | ||||| | ||| ||| | | ||| |||| |||||||| || | Sbjct 917837 CTGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTAC 917896 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTA--TCTC 53920 || | |||||| || |||||||| | || | ||| ||| | | ||| | ||| Sbjct 917897 TTGAGCTTCTATTATTGCTTTCCAAAGAACTTGTGCCCTTACTT--GTTTTACAAATCTA 917954 Query 53921 TTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT 53980 |||||| |||| ||| | ||| || |||||| || | ||||||| | | || Sbjct 917955 TTTTCTTTTTCATATGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAAC 918014 Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || || |||| |||||||| | | ||| | || |||| | |||| |||||| Sbjct 918015 CCTGGGCAATCATGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATG 918074 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || |||||||| ||||| | || ||| || || |||| | ||| || ||||| Sbjct 918075 AAAAGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCA 918134 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 || || || || | ||| | ||| | | ||||| | ||||||||||||||| || | Sbjct 918135 GTGTTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCACGGTTCCAAATAGACT 918194 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | ||||||| || || || ||||| ||||| | |||||||| || ||||| ||| Sbjct 918195 GCAAAAGCTCCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAA 918254 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 |||| |||||||| | || |||||| ||| ||||||| || || | ||||| | || Sbjct 918255 ACTCGTAACATTGGTACAAGACCATTTGATACACCATTTGTTCCTGCTATATAAGTACCT 918314 Query 54281 CTGGCACGAATATTACT--AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | || | ||| | | | || | ||| || || ||||| |||||| || || | Sbjct 918315 TTAGCCCTTATA-CAGTGGACATG-GACACCAATTCCACCTGCAGATTTAGATATCAAAG 918372 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | || | ||||| ||||| || || || || || || ||||| |||| | ||||| Sbjct 918373 CACACTGCTTTAAGGTATCGTAAATTCCTTCAATGCTGTCATCTTTCATTGCCACTAGAA 918432 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 |||| || | |||| | || |||| | || |||||||| || || || | Sbjct 918433 AACATGATGATAGTTGGGGGCGTGGAGTTGCAGCTGAGAATAAGGTTGGGCTGGCATGAG 918492 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518 | || |||| |||||||||| ||||| || | || |||| || ||||| || Sbjct 918493 TGAAATATTTCTCAGAAAGTAAGTTGTATGTATTTATGGCTGCATCAATATCTTCACCAT 918552 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 ||||||| | || || ||||| | ||| || ||||||| |||| Sbjct 918553 GAATTCCAATTGACACTCGCATCAGCATATGTTGAGGTCGTTCA 918596 >seq483 Length=1310704 Score = 127 bits (140), Expect = 2e-24 Identities = 147/197 (75%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || ||||| ||||| ||||| |||||||| ||||| || ||||| ||||| || Sbjct 173463 AATGTAAGTCCCGGCATAAGGCCCCGCTTTTTGAGCCAGAAGATGGAAGCAAAACTGCCT 173404 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || || || ||||||||||| || |||||||||| || ||||| || || | || | Sbjct 173403 GAGAAAAAGATTCCTTCTACAGCTGCAAAGGCAACAATCCTTTCACC--AAATGTTGCAG 173346 Query 24306 TCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 || || ||||||| | |||||||||| || ||||| |||||||| || | |||| Sbjct 173345 TCTTGCTTGCAATCCACTGTAGAGCCCAATCTGCTTTCTTCTTTACACAGGGAAGAGTCT 173286 Query 24361 CTATAGCATTAAAGAGA 24377 | | |||||||| ||| Sbjct 173285 CAACCGCATTAAACAGA 173269 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 ||||||||| ||||||| ||||| ||||| || || || || ||||||||||| ||||| Sbjct 166351 ATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCCTC 166292 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 || | || |||||| |||||| || | || |||||||| || || || || Sbjct 166291 AGTGACTTGAACTTCTTGTGAAAATCTCTCAACCAAGTTTTCATTTACAATGCCATCTGA 166232 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 24579 || ||||| || || | ||||| || || |||| Sbjct 166231 AGCCGCAAAGAAAGCAAGGACATGCTTGATGAAAT 166197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593399038476240