Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq472 179 3e-40 seq747 84.2 2e-11 >seq472 Length=1464009 Score = 179 bits (198), Expect = 3e-40 Identities = 577/885 (65%), Gaps = 29/885 (3%) Strand=Plus/Minus Query 105613 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 105672 || || ||||| || || |||||||| || || || |||| | || ||||| | ||| Sbjct 408214 ACTCCAGTCCAACCACGTCCGTACATAGCAACACCGACAACCAGCTTTTTGGGCTGGACA 408155 Query 105673 CCTTGTTTCAGTAACGCATC-GACAGCGTAGTGTGTAGTGTATAGCT--CTTCCGAGTTC 105729 ||||| |||| | | | | || | || ||| || ||||| || | ||| || | | Sbjct 408154 CCTTGGGTCAGCAG-GTACCTGATACCGAAGTCGGTGGTGTA-AGTTTCCTTAGGACT-C 408098 Query 105730 CAACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTTTA 105789 ||| ||| || || | | || |||| |||| | ||| ||||| || || || Sbjct 408097 CAAGATGGAGCATATAGAGCAGTCTGGTGTCCCAGAGTGTCGTTAGACCAGGCACCCTTG 408038 Query 105790 AAATCGTAACTCATGAGAAATATTTTGCCTAATGACTTTTGCGCTTCGGCGTAGTTTACC 105849 || ||||||||||| | || || | | | | | || || ||||| |||||| || Sbjct 408037 AAGTCGTAACTCATAACGAAGATATGGTCCATGTATTTCTGGGCTTCCTTGTAGTTCACG 407978 Query 105850 ACGGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTT 105909 || |||||||| |||| ||||| || || || || |||||| || || || Sbjct 407977 ACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGAGGTCAACTCGTAAGTTCTACCAGTC 407918 Query 105910 TGCGCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTCCAACAACAAAATGTATGTTTTG 105969 | || | || || || | |||| || | |||| || | | || |||| Sbjct 407917 TCAGCCGCCAGCTCATCCAACATTTGACGTAATTCCTTCATGAGCTGAACGTATA----- 407863 Query 105970 GCGTCACCGTCCGCATCGCCCAACGAC----GGGTTAGCCCCTTTGCCGCCCGGAAACTC 106025 | || ||||| | | | | ||| |||||||| |||||||| || || ||||| Sbjct 407862 -CATCTCCGTCTTTAG-GACTACCGAGATCAGGGTTAGCGCCTTTGCCACCTGGGAACTC 407805 Query 106026 CCAATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAGAAATTCCTTAACCGAATC 106085 |||||| ||||| ||||| || ||||| ||||| ||| || || || || || || | Sbjct 407804 CCAATCAATGTCGACACCATCGAAGAACTTCCAAGTTTGGAGGAAGTCTTTCACGGAGGC 407745 Query 106086 TACAAAA-----ACGTTTCTTTTTTCAACATCG-TGCATAAAATAAAATGGGTCTGATAG 106139 || ||| ||| || |||| ||| || | || | | || || || | | Sbjct 407744 AACGAAACGATCACGCTTGGTTTTG-----TCGGTGAAGAAGA-AGAAGGGATCGGCCAA 407691 Query 106140 AGTCCAGCCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCTAATTTTGCCGCCAT 106199 |||||||| || |||||||| | | ||||| | || ||| ||| | ||| Sbjct 407690 TGTCCAGCCACCAATTGAAGGTAAGACCTTTAAGCCAGTATTCGCTTGTTTCAACTGCAT 407631 Query 106200 CAACTGTCCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACACCTTTTTGGGGTTT 106259 || ||| || || || ||||| || ||||||||||| | || | || ||||| ||||| Sbjct 407630 CAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAATCCCTTTTGAGGTTT 407571 Query 106260 TTGTACGGCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCGCGTCCCTTGCACGA 106319 || | ||| ||||| |||||||| || | ||| ||||| ||||| || || |||| || Sbjct 407570 CTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCACGGCCGCTGCATGA 407511 Query 106320 TCTTTGCAAAGATTCAAAGCTTCCGGGTATCGTTTTGAGGGCGTCGTTTATTCCATCGCC 106379 | ||| | | || ||| || || || ||| | ||| || || ||||| || Sbjct 407510 ACGTTGTAGTGCTTGAAAACTGCCCTCAATTTCTTTCAAACTGTCATTGATGCCATCACC 407451 Query 106380 GCCGCAGATGGGTATGAAACCATACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTC 106439 || || || || ||||| || || | ||| || | | || || | ||||| ||| Sbjct 407450 ACCACAAATCGGAATGAAGCCGTAGAGCAAATGAGTCAGGTTCGGAACCGGAACGCGGTC 407391 Query 106440 TACGGGAAAGTTGCGCCCGTACACACCCCACTCAACAAAGTACGC 106484 || || || || | ||||||||||| || || ||||| || Sbjct 407390 CACAGGGAACTTTCTAGGATACACACCCCATTCGACGAAGTAAGC 407346 >seq747 Length=8313734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||||| | || |||||||| ||||| || |||||| Sbjct 4903537 GACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAA 4903596 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || | || ||||||||||| ||||||||||| || || | |||||| Sbjct 4903597 GACGGACGCACCTTGTCAGACTACAATATTCAAAAGGAATCTACACTCCATTTAGTGTTA 4903656 Query 29175 CGATTACGAGGAGG 29188 || |||||||||| Sbjct 4903657 CGTCTACGAGGAGG 4903670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| | || || |||||||| || ||| ||| | | Sbjct 5397668 ATGCAAATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAAGCATCT 5397609 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || ||| || ||||| || | ||| |||||| Sbjct 5397608 GACACCATAGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCAG 5397549 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | ||||||||||||||||| || |||||| || | | ||| | || |||| Sbjct 5397548 CAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTAT--CTGACTACA 5397491 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 | || ||||| ||||||||||| || |||||||||| Sbjct 5397490 ACATCCAGAAAGAATCTACTCTGCATTTGGTGTTACG 5397454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| | || || |||||||| || ||| ||| | | Sbjct 5398124 ATGCAAATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAAGCATCT 5398065 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || ||| || ||||| || | ||| |||||| Sbjct 5398064 GACACCATAGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCAG 5398005 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | ||||||||||||||||| || |||||| || | | ||| | || |||| Sbjct 5398004 CAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTAT--CTGACTACA 5397947 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 | || ||||| ||||||||||| || |||||||||| Sbjct 5397946 ACATCCAGAAAGAATCTACTCTGCATTTGGTGTTACG 5397910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| | || || |||||||| || ||| ||| | | Sbjct 5398580 ATGCAAATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAAGCATCT 5398521 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || ||| || ||||| || | ||| |||||| Sbjct 5398520 GACACCATAGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCAG 5398461 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | ||||||||||||||||| || |||||| || | | ||| | || |||| Sbjct 5398460 CAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTAT--CTGACTACA 5398403 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 | || ||||| ||||||||||| || |||||||||| Sbjct 5398402 ACATCCAGAAAGAATCTACTCTGCATTTGGTGTTACG 5398366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| || | ||| |||||| || || | ||||||||||||||||| || ||| Sbjct 5398943 GACAAAGAGGGAATTCCCCCAGATCAGCAGCGATTGATCTTTGCGGGCAAACAGCTTGAA 5398884 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 ||| || | | ||| | || ||||| || ||||| ||||||||||| || |||||| Sbjct 5398883 GATGGTCGTACATTAT--CTGACTACAACATCCAGAAAGAATCTACTCTGCATTTGGTGT 5398826 Query 29173 TACG 29176 |||| Sbjct 5398825 TACG 5398822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428109108145265