Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq472 250 2e-61 seq762 149 5e-31 seq428 113 4e-20 seq747 95.1 1e-14 seq8861 87.8 2e-12 seq5054 84.2 2e-11 >seq472 Length=1464009 Score = 250 bits (276), Expect = 2e-61 Identities = 606/905 (67%), Gaps = 17/905 (2%) Strand=Plus/Minus Query 102144 TGTCGCCGGCGTAGCC-TGACACGCCCGTCCACCCGCGGCCGTACATGGCGACGCCCACG 102202 ||||| || |||| | ||| || || ||||| || || |||||||| || || || || Sbjct 408234 TGTCGTCGTTGTAGTCGTGA-ACTCCAGTCCAACCACGTCCGTACATAGCAACACCGACA 408176 Query 102203 ATGAG-TTTGTGGGCCGCTACGCCTTGGCCCGTGAGCA---ACTTCACGGCGTGGTCGGT 102258 | || ||| ||||| | || |||||| || |||| || | | || |||||| Sbjct 408175 ACCAGCTTTTTGGGCTGG-ACACCTTGG---GTCAGCAGGTACCTGATACCGAAGTCGGT 408120 Query 102259 GGTGTACAGCTCGTTGGCGTTCCAACTGGGCGCGTACAGCGTGGTCTGGTAGCCCAAATC 102318 |||||| || || | ||||| || || || || | ||||||| |||| | Sbjct 408119 GGTGTAAGTTTCCTTAGGACTCCAAGATGGAGCATATAGAGCAGTCTGGTGTCCCAGAGT 408060 Query 102319 CGTGTTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCT 102378 ||| ||||| || ||||| || ||||||||||| | ||| || | || | | | | Sbjct 408059 GTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATAACGAAGATATGGTCCATGTATTT 408000 Query 102379 TTGAGCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGT 102438 || || | | ||| ||||| || || ||||| | || | || || || || Sbjct 407999 CTGGGCTTCCTTGTAGTTCACGACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGAGGT 407940 Query 102439 CAGCTCGTACGTCTTGTTCGTTTGCAGCTGC-AGTTCGTCCAGCATGGCGCGCAACTCTT 102497 || |||||| || | || | |||| || || || |||| ||| || || || | Sbjct 407939 CAACTCGTAAGTTCTACCAGTCT-CAGCCGCCAGCTCATCCAACATTTGACGTAATTCCT 407881 Query 102498 TCAGCAAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGC 102557 ||| | || ||| || |||| | | ||||| | ||||| |||| Sbjct 407880 TCATGAGCTGAACGTATACATCTCCGTCTTTAGGAC---TACCGAGATCAGGGTTAGCGC 407824 Query 102558 CCTTGCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCA 102617 | ||||| || || ||||||||||| ||||| || || ||||| |||||||| || | Sbjct 407823 CTTTGCCACCTGGGAACTCCCAATCAATGTCGACACCATCGAAGAACTTCCAAGTTTGGA 407764 Query 102618 AAAACTCTTTAACGGATTCGACAAACACGCGC-CGCTTGTCCGCGTCGTGCATGAAATAG 102676 || ||||| ||||| | || || ||| | |||||| |||| | ||| || Sbjct 407763 GGAAGTCTTTCACGGAGGCAACGAA-ACGATCACGCTTGGTTTTGTCGGTGAAGAAGAAG 407705 Query 102677 AACGGGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCC 102736 || || |||| || |||||||| ||||| || || | || || || | || || Sbjct 407704 AAGGGATCGGCCAATGTCCAGCCACCAATTGAAGGTAAGACCTTTAAGCCAGTATTCGCT 407645 Query 102737 AGCTTGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACG 102796 | || | ||||| ||| || ||||| |||||||||||||||||||| | |||| Sbjct 407644 TGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAAT 407585 Query 102797 CCCTTTTGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCG 102856 |||||||| || || || | ||| ||||| || |||||||||| ||||| |||||| | Sbjct 407584 CCCTTTTGAGGTTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCA 407525 Query 102857 CGGCCTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTCTTGAGCGCGTCG 102916 ||||| |||| || || || || |||| ||||||||| ||| || | ||| Sbjct 407524 CGGCCGCTGCATGAACGTTGTAGTGCTTGAAAACTGCCCTCAATTTCTTTCAAACTGTCA 407465 Query 102917 TTTAGCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGGC 102976 || | || || || || |||||||| ||||||||||| |||| ||| | |||||| || Sbjct 407464 TTGATGCCATCACCACCACAAATCGGAATGAAGCCGTAGAGCAAATGAGTCAGGTTCGGA 407405 Query 102977 AGCGGCACTTTGTCCACCGGAAAGCCGCGGCCGTACACGCCCCACTCTACGAAATACGCG 103036 | ||| || |||||| || || | ||||| ||||| || ||||| || ||| Sbjct 407404 ACCGGAACGCGGTCCACAGGGAACTTTCTAGGATACACACCCCATTCGACGAAGTAAGCG 407345 Query 103037 GCCAC 103041 |||| Sbjct 407344 CCCAC 407340 >seq762 Length=5301712 Score = 149 bits (164), Expect = 5e-31 Identities = 343/521 (66%), Gaps = 47/521 (9%) Strand=Plus/Minus Query 29052 AGTCGCGGCCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCGGGCGTGTTGCT 29111 |||| || || || || | |||||||| ||||||||||| |||| | |||||| || | Sbjct 754384 AGTCACGTCCTTTCACCAATTGCACGTACGCGCAGCGGTCGAACCATCTGGCGTGCTGTT 754325 Query 29112 GCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCAAAAGCACCGCG 29171 |||||| |||| ||| ||||||||| || || || |||||||| | ||||| || Sbjct 754324 CCCACGGAACGTCATCGCTTTCCCAATCTTTTAGCCCTCCGTCGCAATAGAAGCATTTCG 754265 Query 29172 TCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAACTCTTCGGGCCGCTGTT 29231 | ||||| || ||||| || || |||||||||||||| |||| || ||||| || Sbjct 754264 TTTTGTCACCTTGGCCTGTATAGAAGAATCCGGCCTCTGCCAGTTCCTCGGGTTTTTGGC 754205 Query 29232 TCAACCCGCGGGGCCACTCCGCAAAGGTGCGCAAACGCGCGGCTTCCGTGGCATACTGCG 29291 || | | ||||| ||| |||||| | |||||||| || |||| ||| ||| Sbjct 754204 GCATACATCTCGGCCAGTCCTTGAAGGTGGCGAGCCGCGCGGCCTCGGTGGAGTACCGCG 754145 Query 29292 GGTGCGCGGCCGCCGACCGCGCCGGCGGG--GCGCGGTCG-TGTGG---------CGTGT 29339 |||| ||| |||| | || || || ||| || || ||| ||| | Sbjct 754144 CGTGCACGG-GGCCGGGCATGCGGGGAGGCTGCGTGGCCGCACTGGCCCCACATTCGTCT 754086 Query 29340 C--------GTG--------------CGCGTTG------------TTGCGCACAAACGGA 29365 | | | |||||| || || ||||| ||| Sbjct 754085 CTACCGACAGCGGCCGCCTCTCCCCCAGCGTTGGCATACATTTGTTTTCGTACAAAGGGA 754026 Query 29366 CACTGCGGCGCCCACCGCTTGTGGTCCGTTTCCGGGTCGTCGCCCCTTACCCAATTCGTA 29425 ||||| |||||||| | | || || | | || |||||||| ||||| || || Sbjct 754025 CACTGGGGCGCCCATCTCCGATGATCGGCGGCAGGATCGTCGCCTTCGACCCACCTCATA 753966 Query 29426 ATCTCTACCTTGCAAAACGCGCAGCGCACCTCGTCGCCGCGGCCCAAGTAGTAGAACCCG 29485 || |||||||| || || || |||| ||||||||||||||| || | ||||||||| ||| Sbjct 753965 ATTTCTACCTTACAGAAAGCACAGCACACCTCGTCGCCGCGACCGAGGTAGTAGAATCCG 753906 Query 29486 CTGGCGGCCATGCGGCTCGGCTCCAAAAACTGGACGGGCCA 29526 || ||||| | |||| ||||||| |||||||| Sbjct 753905 TTGCGGGCCAATTGTTCCGGCGTCAAAAACGTAACGGGCCA 753865 >seq428 Length=3255295 Score = 113 bits (124), Expect = 4e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788 || |||||||| |||||||| ||||| ||||||| | || ||||||| ||||||||| Sbjct 2870424 GGGGGCGTGGGTTTGAACCTGTGCGGCGCCAACCACCTGTTCCTGCTGGACCCGCACTGG 2870483 Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAG 38845 |||||||| | |||| ||||||||| |||||| || ||||| | |||||| | ||| Sbjct 2870484 AACCCGCAGCTCGAGCAGCAGGCGCAGGACCGCGTCTACCGCGTCGGCCAGGACAAG 2870540 Score = 109 bits (120), Expect = 5e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788 || |||||||| |||||||| ||||| ||||||| | || ||||||| ||||||||| Sbjct 2871850 GGGGGCGTGGGTTTGAACCTGTGCGGCGCCAACCACCTGTTCCTGCTGGACCCGCACTGG 2871909 Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCA 38838 |||||||| | |||| ||||||||| |||||| || ||||| | ||||| Sbjct 2871910 AACCCGCAGCTCGAGCAGCAGGCGCAGGACCGCGTCTACCGCGTCGGCCA 2871959 >seq747 Length=8313734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || ||||||||||| ||||| | || ||| | |||| |||||||| ||||| Sbjct 4903412 GTGGATTCTTTTTGAATGTTGTAGTCTGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCA 4903353 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||| || || || | ||||| ||||| |||||| ||| Sbjct 4903352 GCAAAGATGAGACGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATCTTCGCCTTC 4903293 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || |||||| ||| | || |||||||||||||||| ||| Sbjct 4903292 ACATTCTCAATTGTGTCCGAAGGCTCCACTTCTAAAGTGATGGTCTTGCCGGTTAGAGTT 4903233 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 4903232 TTCACAAAGATCTGCAT 4903216 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | |||| ||| ||||| || || || || ||||| ||||| | Sbjct 5396986 CCACCACGGAGTCTCAAAACCAAATGTAAAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5397045 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||||||||||||| | || | || |||||| ||| || Sbjct 5397046 AGTGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCCGGAGGA 5397105 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||||| |||||| | ||| || ||| | || | Sbjct 5397106 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACT 5397165 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| || ||||| | ||||||||||| || ||||| Sbjct 5397166 TCCAATGTGATGGTTTTACCGGTAAGTGTTTTGACAAAGATCTGCAT 5397212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| || | |||| ||||| ||| || || || || ||||| ||||| | Sbjct 5398126 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5398185 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || || ||||||||||||||| |||| | || |||||| || ||| Sbjct 5398186 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 5398245 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||||| |||||| | ||| || ||| | || | Sbjct 5398246 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACT 5398305 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || ||||| || ||||| | ||||| ||||| || |||||| Sbjct 5398306 TCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398353 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| || | |||| ||||| ||| || || || || ||||| ||||| | Sbjct 5398582 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5398641 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || || ||||||||||||||| |||| | || |||||| || ||| Sbjct 5398642 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 5398701 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||||| |||||| | ||| || ||| | || | Sbjct 5398702 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACT 5398761 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || ||||| || ||||| | ||||| ||||| || |||||| Sbjct 5398762 TCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398809 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| || | |||| ||||| ||| || || || || ||||| ||||| | Sbjct 5397670 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5397729 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || || ||||||||||| ||| |||| | || |||||| || ||| Sbjct 5397730 AATGTACGACCATCTTCAAGCTGTTTGCCAGCAAAAATCAATCGCTGCTGATCTGGGGGA 5397789 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||||| |||||| | ||| || ||| | || | Sbjct 5397790 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACT 5397849 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || ||||| || ||||| | ||||| ||||| || |||||| Sbjct 5397850 TCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5397897 >seq8861 Length=554 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| || | |||| ||||| ||| || || || || ||||| ||||| | Sbjct 14 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 73 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || || ||||||||||||||| |||| | || |||||| || ||| Sbjct 74 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 133 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||||| |||||| | ||| || ||| | || | Sbjct 134 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACT 193 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || ||||| || ||||| | ||||| ||||| || |||||| Sbjct 194 TCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATCTGCATT 241 >seq5054 Length=501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/188 (70%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||||| ||| ||||| || || ||||| ||||| | |||||| | | ||| Sbjct 191 AGTACTAAATGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCC 132 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||||||||| ||| | || || | |||||| || || | ||||||||||| Sbjct 131 TCCAACTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGATC-CCTTCCTTGTCT 73 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || |||||| | | | ||||| |||||| ||| | ||||| ||| Sbjct 72 TGGATTTTGGCTTTCACATTCTCAATTGTATCTGAGGGCTCGACTTCAAGAGTAATTGTC 13 Query 21144 TTGCCGGT 21151 ||||| || Sbjct 12 TTGCCAGT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422035527058508