Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq472 215 4e-51 seq466 91.5 1e-13 seq747 84.2 2e-11 >seq472 Length=1464009 Score = 215 bits (238), Expect = 4e-51 Identities = 582/881 (66%), Gaps = 21/881 (2%) Strand=Plus/Minus Query 97380 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 97439 || || ||||| || || |||||||| || || || |||| | || ||||| | ||| Sbjct 408214 ACTCCAGTCCAACCACGTCCGTACATAGCAACACCGACAACCAGCTTTTTGGGCTGGACA 408155 Query 97440 CCTTGTTCCAGTAACGCATC-GACAGCGTAATGTGTAGTGTACAGCT--CTTCCGAGTTC 97496 ||||| ||| | | | | || | || | | || ||||| || | ||| || | | Sbjct 408154 CCTTGGGTCAGCAG-GTACCTGATACCGAAGTCGGTGGTGTA-AGTTTCCTTAGGACT-C 408098 Query 97497 CAACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTTTA 97556 ||| ||| || || | | || |||| |||| | ||| ||||| || || || Sbjct 408097 CAAGATGGAGCATATAGAGCAGTCTGGTGTCCCAGAGTGTCGTTAGACCAGGCACCCTTG 408038 Query 97557 AAATCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACC 97616 || |||||| |||| | || || | ||| | | || || ||||| |||||| || Sbjct 408037 AAGTCGTAACTCATAACGAAGATATGGTCCATGTATTTCTGGGCTTCCTTGTAGTTCACG 407978 Query 97617 ACGGCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTT 97676 || |||||||| | || ||||| || || || || |||||| || || || Sbjct 407977 ACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGAGGTCAACTCGTAAGTTCTACCAGTC 407918 Query 97677 TGCACTTCGAGGTCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTTG 97736 | | | || || || | ||||| || | || | || | | ||| |||| | Sbjct 407917 TCAGCCGCCAGCTCATCCAACATTTGACGTAATTCCTTCATGAGCTGAACGTATACATCT 407858 Query 97737 GCGTCACGCTCCGCATCGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAA 97796 |||| | | | || || |||||||| |||||||| || || || |||||| Sbjct 407857 CCGTCT---TTAGGACTACCGAGATCAGGGTTAGCGCCTTTGCCACCTGGGAACTCCCAA 407801 Query 97797 TCGACGTCGACACCATCAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCTACA 97856 || | |||||||||||| || || ||||| ||| | || || || || || | || Sbjct 407800 TCAATGTCGACACCATCGAAGAACTTCCAAGTTTGGAGGAAGTCTTTCACGGAGGCAACG 407741 Query 97857 AAA-----ACGTTTCTTTTTTCAACGTCGTGCATGAAATAGAACGGGTCCGACAGAGTCC 97911 ||| ||| || |||| |||| | ||| |||| || || | || |||| Sbjct 407740 AAACGATCACGCTTGGTTTT-----GTCGGTGAAGAAGAAGAAGGGATCGGCCAATGTCC 407686 Query 97912 AGCCTCCTATTGAAGG-AAGAATTTTTAGATGTGGGTTTGCTAATTTCGCCGCCATCAAT 97970 |||| || |||||||| |||| ||| || | || ||| |||| | ||||| Sbjct 407685 AGCCACCAATTGAAGGTAAGACCTTTAAGCCA-GTATTCGCTTGTTTCAACTGCATCAGC 407627 Query 97971 TGTCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGT 98030 || || || || |||||||| || |||||||| | || | |||||||| ||||| || Sbjct 407626 TGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAATCCCTTTTGAGGTTTCTGC 407567 Query 98031 ACGGCGGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGT 98090 | ||| ||||| ||||||||||| | ||| ||||| ||||| || || ||||| || ||| Sbjct 407566 AGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCACGGCCGCTGCATGAACGT 407507 Query 98091 TGCAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCG 98150 || || |||| |||||| || ||| ||| | ||| || || ||||| ||||| Sbjct 407506 TGTAGTGCTTGAAAACTGCCCTCAATTTCTTTCAAACTGTCATTGATGCCATCACCACCA 407447 Query 98151 CAGATGGGTATGAAACCGTACAACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACG 98210 || || || ||||| ||||| | ||| || | | || || | ||||| ||| || Sbjct 407446 CAAATCGGAATGAAGCCGTAGAGCAAATGAGTCAGGTTCGGAACCGGAACGCGGTCCACA 407387 Query 98211 GGAAAGCTGCGCCCGTACACACCCCACTCGACAAAGTACGC 98251 || || | | ||||||||||| ||||| ||||| || Sbjct 407386 GGGAACTTTCTAGGATACACACCCCATTCGACGAAGTAAGC 407346 >seq466 Length=1632705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||||||| ||||||| | ||||| || |||||||| || |||| | | Sbjct 1583510 AATGCAAATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTC 1583451 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || |||| ||||| || || |||||| | || ||| || Sbjct 1583450 CGACACTATCGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 1583391 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | || |||||||| || |||||||| |||||| | ||| | | || || || Sbjct 1583390 ACAACGTCTCATCTTTGCCGGGAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAA 1583331 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || || ||||| || |||||| |||| || || | ||||||| Sbjct 1583330 CATCCAGAAAGAATCCACACTTCACCTGGTTTTGAGACTTAGAGGAGG 1583283 >seq747 Length=8313734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || |||||||| | || |||||||| ||||| || ||||| Sbjct 4903537 GACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAA 4903596 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || || | || ||||||||||||||||||||||| || || | |||||| Sbjct 4903597 GACGGACGCACCTTGTCAGACTACAATATTCAAAAGGAATCTACACTCCATTTAGTGTTA 4903656 Query 25248 CGATTACGAGGAGG 25261 || |||||||||| Sbjct 4903657 CGTCTACGAGGAGG 4903670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410579198752682