Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq11118 554 7e-153 seq5052 188 1e-42 seq747 145 1e-29 seq8861 114 2e-20 seq466 113 7e-20 >seq11118 Length=575 Score = 554 bits (614), Expect = 7e-153 Identities = 455/574 (79%), Gaps = 0/574 (0%) Strand=Plus/Plus Query 107582 TCATCCATAACATTTGTATTAAATATACTATCATATATTGATAAATAATCTGATAAAAAT 107641 |||||||| | ||| |||||||||| |||||| |||| | |||||||||||||||| Sbjct 1 TCATCCATTAAATTAGTATTAAATAATGCATCATAATTTGAAATATAATCTGATAAAAAT 60 Query 107642 AATTCAGCATTAGTAAGTTTACCATAAGTTTCATATTGAAAAATATTATCTTTATGTGTA 107701 |||||||||||||| | |||||||||| |||||||||||| |||||||||||| ||||| Sbjct 61 AATTCAGCATTAGTTAATTTACCATAAACTTCATATTGAAATATATTATCTTTAGGTGTA 120 Query 107702 GTTATAATCATATAACCATGTGATTGTATATAATTAGCTTCAACAAAATTAAACATATCT 107761 |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| Sbjct 121 GTTATAATCATATAACCATGTGATTGAATATAATTTGCTTCAACGAAATTAAACATATCA 180 Query 107762 ATTGATTCACCACATATTTTACATATAGCTAAATTATTTGAAAAAGCTATATATTTATCA 107821 || ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| Sbjct 181 ATAGATTCACCACATATTTTACATATTGCTAAATTATTTGAAAATGATATATATTTATCA 240 Query 107822 ATAAATGCANNNNNNNNNNNNNNNNNATTATTTACTTCTTTGAAAACTATATTATAATCA 107881 ||||| ||| ||||||||||||||| || || |||||||||||| Sbjct 241 ATAAACGCATTATAGTTATTAAAAAAATTATTTACTTCTTTAAATACCATATTATAATCA 300 Query 107882 TCTATATGTTTACATGGTATATATTTATATACATGTTTGACTGGTTCATANNNNNNNNNN 107941 || |||||||||||||||||||||| |||||||||||| | |||||||| Sbjct 301 TCAATATGTTTACATGGTATATATTCATATACATGTTTAATAGGTTCATATAATTTAAAA 360 Query 107942 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTtaataaatcaaataatctaata 108001 ||||| |||||||||||||||| Sbjct 361 TTATTTGTATATTTTAATAATGGATATTCATATACATTTAATGTATCAAATAATCTAATA 420 Query 108002 taataacaatgtaaaaaataacataaacaaaacattctttcatataatGTTGTTAATCTA 108061 |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| || Sbjct 421 TAATAACAATGTAAAAAATAACATAAACAAAACATTCTTTGATATAATCTTGATAATTTA 480 Query 108062 TTTCTAGTTATATAAGAAATAATATCATCTATGGTATTTTGTATAATATCTTTAACATTT 108121 | |||||||||| |||| | | ||||||||| ||||||||||| | ||||||| |||| Sbjct 481 TATCTAGTTATAAAAGACACTACATCATCTATAGTATTTTGTATTAATTCTTTAATATTT 540 Query 108122 GTTAAATTAAATTGTCCTTTTCCTTTTATATTTA 108155 |||||||| ||||| ||||| ||||||| ||||| Sbjct 541 GTTAAATTGAATTGGCCTTTACCTTTTAAATTTA 574 >seq5052 Length=501 Score = 188 bits (208), Expect = 1e-42 Identities = 313/449 (70%), Gaps = 11/449 (2%) Strand=Plus/Minus Query 85930 ATTCATCTGTATCTAT---TGTA---TCAATTAAAATATTATCTT-CATCATCATCTACA 85982 ||||||||||||| || | || ||||| ||||||| ||| | ||| | || | | Sbjct 448 ATTCATCTGTATCAATACTTTTAGATTCAATCAAAATATAATCATACATTAA-ATTTGTA 390 Query 85983 AAAGTTACTAAATATTTTTGCAAATCATTTACAGATTCTATTTGATCATCATATTCAGTA 86042 ||||| | |||||| | ||||| |||| | ||| | || ||||||||||||| Sbjct 389 TTAGTTATAATATATTTACTAAGATCATCAACAGTATTTATATCATAATCATATTCAGTA 330 Query 86043 TGATAATATTTAGAATTTGATTTTTTGCTGTATATACATCTTAATAAAGTATTATTTTTA 86102 |||||||| |||||||| |||||||| || ||||| ||||||| || ||||| ||| || Sbjct 329 TGATAATAATTAGAATTGGATTTTTTACTATATATTAATCTTAACAATGTATTTTTTCTA 270 Query 86103 AATACTTGTTCATCAATTCCTAAAATAAGTTCATTTGTTGNNNNNNNNNNNNNNNTATGA 86162 |||| || ||||| || | || | ||||||| | | || Sbjct 269 AATAAGTGATCATCTATATTTTTAACCATTTCATTTTCCGATGTTTTTTTATAATTTTGT 210 Query 86163 ATATGGATTTTTAATGTAGTAAATACACTATTAGATACTAAAATATTTGTAAAAAATACA 86222 ||||| |||||||| | ||| || |||| | || | ||||||||||||||||||| Sbjct 209 ATATGATATTTTAATGATATGAATGCATTATTTGTTATAATAATATTTGTAAAAAATACA 150 Query 86223 TGTGTAGATATTTTATTAGGATCATTTGAAGTTGTTGCAGAAATTCCATCAAATATATGA 86282 ||| ||||||||||| || |||||||| | ||||| | | |||||||| ||||| | Sbjct 149 TGTAAGGATATTTTATTTGGTTCATTTGATGATGTTGAATATATTCCATCTAATATGTAT 90 Query 86283 TTTTTAAGGTCATCTTCATT-TAGTTCTAAAGTTGAATTTATATTATAAAATTCAATAAA 86341 | ||||| |||||||| || || | | | || || |||||| | | ||||| Sbjct 89 TGTTTAATAATTTCTTCATTATAATT-TGATATATTATCAATTTTATAATAATTTATAAA 31 Query 86342 TACAGATGCAAGAAATGATGATATTTCAT 86370 | ||||| | || || |||||||||| Sbjct 30 TGTTGATGCTAATAAAGA-GATATTTCAT 3 >seq747 Length=8313734 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| |||| || || || || ||||| ||||| |||| | |||||| Sbjct 5399723 ACCATGCAGATTTTTGTAAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCA 5399664 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || || ||| ||||| ||||||||||| ||||| || || || || ||| Sbjct 5399663 TCCGACACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGAT 5399604 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || | || ||||| || || |||||| | || || | || |||||| ||||| Sbjct 5399603 CAGCAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGGACATTATCCGATTAC 5399544 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||||||||| ||| | |||||||| |||||| | ||||||| || Sbjct 5399543 AATATTCAAAAAGAATCTACTCTCCATTTGGTATTACGTCTGAGAGGTGGAAT 5399491 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| || || ||||| || || |||| |||||||| | Sbjct 5397440 ATGCAAATTTTTGTGAAAACACTTACCGGTAAAACCATCACATTAGAAGTTGAAGCATCT 5397381 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || ||||| |||||||| || || || || ||||| Sbjct 5397380 GACACCATTGAAAATGTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCTCCGGATCAG 5397321 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || |||||||| ||||| | || || | || ||| || || || || Sbjct 5397320 CAGCGATTGATCTTTGCAGGCAAACAGCTTGAAGACGGCCGTACACTATCTGACTACAAC 5397261 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| ||||||||||||| | | || ||||| || Sbjct 5397260 ATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGGCAT 5397211 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||||| || || ||||| || || | || |||||||| Sbjct 5397897 AATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATC 5397838 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| || ||||| || ||||| || || || || ||||| Sbjct 5397837 TGACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 5397778 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | |||||||| || ||||| | || ||| |||| |||||| || || || Sbjct 5397777 GCAGCGATTGATTTTTGCTGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 5397718 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| ||||||||||||| | | || ||||| || Sbjct 5397717 CATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGGCAT 5397667 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||||| || || ||||| || || | || |||||||| Sbjct 5398353 AATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATC 5398294 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| || ||||| || ||||| || || || || ||||| Sbjct 5398293 TGACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 5398234 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | |||||||| || ||||| | || ||| |||| |||||| || || || Sbjct 5398233 GCAGCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 5398174 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| ||||||||||||| | | || ||||| || Sbjct 5398173 CATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGGCAT 5398123 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||||| || || ||||| || || | || |||||||| Sbjct 5398809 AATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATC 5398750 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| || ||||| || ||||| || || || || ||||| Sbjct 5398749 TGACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 5398690 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | |||||||| || ||||| | || ||| |||| |||||| || || || Sbjct 5398689 GCAGCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 5398630 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| ||||||||||||| | | || ||||| || Sbjct 5398629 CATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGGCAT 5398579 Score = 100 bits (110), Expect = 4e-16 Identities = 176/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||||| || || ||||| || || | || |||||||| | Sbjct 5397212 ATGCAGATCTTTGTCAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATCT 5397153 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || ||||| || ||||| || || || || ||||| Sbjct 5397152 GACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCGGATCAG 5397093 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| || ||||| | || ||| | || ||| || || || || Sbjct 5397092 CAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGCCGTACACTATCTGACTACAAC 5397033 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 || || |||||||| ||||| ||||||||||| | | || ||||| || || | || | Sbjct 5397032 ATCCAGAAAGAATCTACTTTACATTTGGTTTTGAGACTCCGTGGTGGCATGTAGATATGC 5396973 Query 124778 A-----TAAAAATTG 124787 | ||||||||| Sbjct 5396972 AGCTTTTAAAAATTG 5396958 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || || || || || || ||| | || | ||||| Sbjct 4903444 ATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCG 4903503 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || ||| || ||||| |||||||| || || ||||||||| Sbjct 4903504 GACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAA 4903563 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | || || | || || || ||| || ||| Sbjct 4903564 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAAT 4903623 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | ||||| || |||||| ||||||| || || Sbjct 4903624 ATTCAAAAGGAATCTACACTCCATTTAGTGTTACGTCTACGAGGAGGAAT 4903673 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || ||||| ||||| || || ||| |||| | || | Sbjct 4903216 ATGCAGATCTTTGTGAAAACTCTAACCGGCAAGACCATCACTTTAGAAGTGGAGCCTTCG 4903275 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || ||| || ||||| |||||||| || || ||||||||| Sbjct 4903276 GACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAA 4903335 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | || || | || || || ||| || || Sbjct 4903336 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAAC 4903395 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | ||| | || | ||| | || || || || Sbjct 4903396 ATTCAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCGTGGAGGCAT 4903445 >seq8861 Length=554 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||||| || || ||||| || || | || |||||||| Sbjct 241 AATGCAGATTTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATC 182 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| || ||||| || ||||| || || || || ||||| Sbjct 181 TGACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 122 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | |||||||| || ||||| | || ||| |||| |||||| || || || Sbjct 121 GCAGCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 62 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| ||||||||||||| | | || ||||| || Sbjct 61 CATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGGCAT 11 >seq466 Length=1632705 Score = 113 bits (124), Expect = 7e-20 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 124533 AATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA 124592 || |||||||||||||| | || || || || || || || || || | ||| | ||| Sbjct 1583515 AACACAATGCAAATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAA 1583456 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || || || || ||| | ||| ||||| ||||| || |||||||| || || Sbjct 1583455 GCTTCCGACACTATCGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGTATTCCTCCA 1583396 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 || |||||| | || || ||||| || ||||||||||| ||| | || || | ||| Sbjct 1583395 GACCAACAACGTCTCATCTTTGCCGGGAAACAATTAGAAGATGGCCGCACTCTTTCAGAC 1583336 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 ||||| || || |||||||| || | || ||||||| | | |||| |||| || | Sbjct 1583335 TATAACATCCAGAAAGAATCCACACTTCACCTGGTTTTGAGACTTAGAGGAGGTAATATA 1583276 Query 124773 AATTC 124777 ||||| Sbjct 1583275 AATTC 1583271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755045570198400