Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq18029 1058 0.0 seq2164 212 2e-50 >seq18029 Length=622 Score = 1058 bits (1172), Expect = 0.0 Identities = 609/623 (98%), Gaps = 1/623 (0%) Strand=Plus/Plus Query 28598 GCTCAGGCGAGAACATCCCGGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTTC 28657 ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1 GCTTAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGG-TACTCATACTCACTTC 59 Query 28658 TAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAG 28717 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 60 TAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATATCTCTGGCGATTGAAG 119 Query 28718 GGCTAAATTCTTCAACGCTAACGTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCAT 28777 |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 120 GGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCAT 179 Query 28778 TTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGTCCCATCCCCATCTTGT 28837 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 180 TTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGT 239 Query 28838 CTGCGACAGATTCCTGGGATAAGCCAAGTTCAtttttctttttttCATAAATAGCTTTAA 28897 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 240 CTGCGACAGATTCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTAA 299 Query 28898 GGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGCGCTCATACGTT 28957 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 300 GGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGTT 359 Query 28958 AAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTA 29017 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTG 419 Query 29018 GCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAG 29077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAG 479 Query 29078 ATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGTGTATATCAAAGCG 29137 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 480 ATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGCG 539 Query 29138 CGATCAACAAGGCCATTCATGCAGGCCGAAATAtttttttAACTATAAACGCTGATGGAA 29197 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 540 CGATCAACAAGGCCCTTCATGCAGGCCGAAAGATTTTTTTAACTATAAACGCTGATGGAA 599 Query 29198 GCGTTTATGCGGAAGAGGTAAAG 29220 ||||||||||||||||||||||| Sbjct 600 GCGTTTATGCGGAAGAGGTAAAG 622 >seq2164 Length=289 Score = 212 bits (234), Expect = 2e-50 Identities = 123/127 (97%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 28474 CTAGGTTTGGATCCTGTTGGCGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCA 28533 || || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 4 CTTGGCTTGGAGCCTGTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCA 63 Query 28534 GAATCACTGGCTTTTTTGGTTGTGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTT 28593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 GAATCACTGGCTTTTTTGGTTGTGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTT 123 Query 28594 CTAAGCT 28600 ||||||| Sbjct 124 CTAAGCT 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126955241627764