Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq11118 165 1e-35 seq747 113 7e-20 seq466 104 3e-17 seq8861 96.9 5e-15 seq755 86.0 9e-12 >seq11118 Length=575 Score = 165 bits (182), Expect = 1e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 55364 TAGCTATATGTAAAATTTGTGGAGAATCGTTAGATATGTTTAATTTTGAAGAAGCAAATT 55423 |||| ||||||||||| ||||| ||||| | |||||||||||||| | |||||||||| Sbjct 211 TAGCAATATGTAAAATATGTGGTGAATCTATTGATATGTTTAATTTCGTTGAAGCAAATT 152 Query 55424 ATATTCAATCTAAAGGCGAAATTATAATAACAACAAATAAAGAAAATATTTTCCAATATG 55483 |||||||||| | || | || || ||||| ||| |||||| ||||| || ||||||| Sbjct 151 ATATTCAATCACATGGTTATATGATTATAACTACACCTAAAGATAATATATTTCAATATG 92 Query 55484 AAACTTATTCAAGATTAGTTAATGCTGAATTATTTTTAACAGATATTATAGGAATTTATG 55543 || |||| | |||| ||||||||||||||||||| ||||| ||| || ||||| Sbjct 91 AAGTTTATGGTAAATTAACTAATGCTGAATTATTTTTATCAGATTATATTTCAAATTATG 32 Query 55544 ATGATATTTTTAACACAAACAGAATGGACGA 55574 ||| | ||||| || || |||||| || Sbjct 31 ATGCATTATTTAATACTAATTTAATGGATGA 1 >seq747 Length=8313734 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || ||||||||||||||||||||||| || || || || || Sbjct 5396986 CCACCACGGAGTCTCAAAACCAAATGTAAAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5397045 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | ||||| || ||||| ||||||| ||||||||||||||| Sbjct 5397046 AGTGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCCGGAGGA 5397105 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| || || Sbjct 5397106 ATTCCCTCTTTGTCCTG 5397122 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | |||||||||||| | |||||||||||| ||||| ||||| | Sbjct 5399492 TTCCACCTCTCAGACGTAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGG 5399551 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | || || | |||||| ||||| ||||||| || |||||||| |||| Sbjct 5399552 ATAATGTCCGTCCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAG 5399611 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||| ||||| Sbjct 5399612 GAATGCCCTCTTTGTCTTG 5399630 Score = 107 bits (118), Expect = 3e-18 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || |||||||| | |||||||||||| || || || || || Sbjct 5397214 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5397273 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || || || | ||||| || ||||| ||||||| ||||||||||||||| Sbjct 5397274 AGTGTACGGCCGTCTTCAAGCTGTTTGCCTGCAAAGATCAATCGCTGCTGATCCGGAGGA 5397333 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| |||||||| || || || || ||| ||| Sbjct 5397334 ATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTTCAATGGTGTCAGATGCTTCAACT 5397393 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| |||||| |||||||| || | |||||| | || |||||||| Sbjct 5397394 TCTAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATTTGCAT 5397440 Score = 102 bits (112), Expect = 1e-16 Identities = 155/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | ||| |||||||| | |||||||||||| || || || || | Sbjct 5397896 TTCCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAG 5397955 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || | ||||| || ||||| ||||||| |||||||| || | Sbjct 5397956 ATAATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGG 5398015 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||| ||||| || || || || || ||| | Sbjct 5398016 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAA 5398075 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||||||||| |||||||| || | |||||| | || |||||||| Sbjct 5398076 CTTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCAT 5398124 Score = 102 bits (112), Expect = 1e-16 Identities = 155/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | ||| |||||||| | |||||||||||| || || || || | Sbjct 5398352 TTCCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAG 5398411 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || | ||||| || ||||| ||||||| |||||||| || | Sbjct 5398412 ATAATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGG 5398471 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||| ||||| || || || || || ||| | Sbjct 5398472 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAA 5398531 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||||||||| |||||||| || | |||||| | || |||||||| Sbjct 5398532 CTTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCAT 5398580 Score = 100 bits (110), Expect = 4e-16 Identities = 154/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | ||| |||||||| | |||||||||||| || || || || || Sbjct 5399266 CCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5399325 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || | ||||| || ||||| ||||||| |||||||| || ||| Sbjct 5399326 AATGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGA 5399385 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| ||||| || || || || || ||| ||| Sbjct 5399386 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCAATGGTGTCAGATGCTTCAACT 5399445 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||||||||| |||||||| || | |||||| | || || |||||| Sbjct 5399446 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5399493 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | ||| |||||||| | |||||||||||| || || || || || Sbjct 5397442 CCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5397501 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||||| || ||||| ||||||| |||||||| || ||| Sbjct 5397502 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGA 5397561 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| ||||| || || || || || ||| ||| Sbjct 5397562 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCTATGGTGTCAGATGCTTCAACT 5397621 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||||||| |||||||| || | |||||| | || |||||||| Sbjct 5397622 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCAT 5397668 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || ||||| || | |||||||||||| || || || || || Sbjct 5399038 CCACCACGCAGTCTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAT 5399097 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | ||||| || ||||| ||||| | ||||||||||||||| Sbjct 5399098 AGTGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAACCGCTGCTGATCCGGAGGA 5399157 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| ||||| || || || || || ||| ||| Sbjct 5399158 ATTCCCTCTTTGTCCTGAATCTTTGCTTTCACATTCTCAATGGTGTCAGATGCTTCAACT 5399217 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||||||| |||||||| || | |||||| | || || ||||| Sbjct 5399218 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5399264 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/229 (67%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | ||| |||||||| | |||||||||||| || || || || | Sbjct 5398808 TTCCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAG 5398867 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || | ||||| || ||||| ||||||| |||||||| || | Sbjct 5398868 ATAATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGG 5398927 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||| ||||| || || || || || ||| | Sbjct 5398928 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAA 5398987 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||||||||| |||||||| || | |||||| | || || ||||| Sbjct 5398988 CTTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5399036 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || |||||||| | |||||||||||| || || || || || Sbjct 5397670 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5397729 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||||| |||||||||||||||| |||||||| || ||| Sbjct 5397730 AATGTACGACCATCTTCAAGCTGTTTGCCAGCAAAAATCAATCGCTGCTGATCTGGGGGA 5397789 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| || || Sbjct 5397790 ATTCCCTCTTTGTCCTG 5397806 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || |||||||| | |||||||||||| || || || || || Sbjct 5398126 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5398185 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||||| || ||||||||||||| |||||||| || ||| Sbjct 5398186 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 5398245 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| || || Sbjct 5398246 ATTCCCTCTTTGTCCTG 5398262 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || |||||||| | |||||||||||| || || || || || Sbjct 5398582 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5398641 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||||| || ||||||||||||| |||||||| || ||| Sbjct 5398642 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 5398701 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| || || Sbjct 5398702 ATTCCCTCTTTGTCCTG 5398718 >seq466 Length=1632705 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||||||||| || |||| || | || |||||||| || ||||| |||||| Sbjct 1583283 CCTCCTCTAAGTCTCAAAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAA 1583342 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| ||||||||||| || ||||| || | | ||| || || |||||| Sbjct 1583343 AGAGTGCGGCCATCTTCTAATTGTTTCCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1583402 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 1583403 ATACCTTCCTTGTCTTG 1583419 >seq8861 Length=554 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/229 (67%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | || |||||||| | |||||||||||| || || || || | Sbjct 240 TTCCACCTCTGAGACGTAGCACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAG 299 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || | ||||| || ||||||||||||| |||||||| || | Sbjct 300 ATAATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGG 359 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||| ||||| || || || || || ||| | Sbjct 360 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAA 419 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||||||||| |||||||| || | |||||| | || || ||||| Sbjct 420 CTTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 468 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || |||||||| | |||||||||||| || || || || || Sbjct 14 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 73 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||||| || ||||||||||||| |||||||| || ||| Sbjct 74 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 133 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| || || Sbjct 134 ATTCCCTCTTTGTCCTG 150 >seq755 Length=6423983 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 10362 AGTGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAATT 10421 |||||||||||||| | |||| | || | | ||| ||||| | |||||||| || Sbjct 2534660 AGTGCATATGATTACACTGTTCCTGCTCGAGGCAAAGAATTAGTGAAAACTGACCTACAA 2534601 Query 10422 ATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAAT 10481 |||||| | || || ||||||| ||| |||| || |||||| ||||||||| || Sbjct 2534600 ATAGAACTACCGCCTGGGTGTTATGGTAGAGTAGCACCTCGATCTGGTTTAGCTCTGAAG 2534541 Query 10482 AAATTTATTGATATTGG 10498 || || |||||| |||| Sbjct 2534540 AATTTCATTGATGTTGG 2534524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743122451400960