Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq472 210 2e-49 seq762 176 4e-39 seq747 102 6e-17 >seq472 Length=1464009 Score = 210 bits (232), Expect = 2e-49 Identities = 639/978 (65%), Gaps = 11/978 (1%) Strand=Plus/Minus Query 6371 ATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCACC 6430 |||||||| |||||||||||||| |||| |||||| ||||| ||| ||| | || || Sbjct 408307 ATCTCCCTATAGTCCACCACACCGTCCTGCCAAGTTCCTTTAACTGGACCATTAGCAACT 408248 Query 6431 CCACTAAACAGATTGTTGTTCGTGTAATTCGTCA-CACCCGACCACCCCCTGCCGTACAT 6489 ||| | || | ||| || |||| | ||| | | || | ||| || | |||||||| Sbjct 408247 CCAGTGAAGGGTATGTCGTCGTTGTAGT-CGTGAACTCCAGTCCAACCACGTCCGTACAT 408189 Query 6490 AGCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAACAAACGCCTCAACGC 6549 ||| || || || |||| ||| | |||| ||| ||| || ||| | | Sbjct 408188 AGCAACACCGACAACCAGCTTTTTGGGCTGGACACCTTGGGTCAGCAGGTACCTGATACC 408129 Query 6550 AAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGTA 6609 ||||| |||||||| |||| | | |||| || || | ||| |||| | |||| Sbjct 408128 GAAGTCGGTGGTGTAAGTTTCCTTAGGACTCCAAGATGGAGCATATAGAGCAGTCTGGTG 408069 Query 6610 GCCCAGATCCGTCATC-GACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTAGT 6668 |||||| ||| | ||||| ||||||||| | ||||| |||| ||||| || | || Sbjct 408068 TCCCAGAGT-GTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATAACGAAGATATGGT 408010 Query 6669 CGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCTGA 6728 | | || | ||| | ||||||| || || | |||||||| |||| |||||| Sbjct 408009 CCATGTATTTCTGGGCTTCCTTGTAGTTCACGACTTGGATCTTGTCCCAACCGGCGCTGA 407950 Query 6729 TGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACATTTGTC 6788 |||| ||||||| | | | || |||| || ||||||| ||||||||||| | Sbjct 407949 TGGCAGAGGTCAACTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGAC 407890 Query 6789 TCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGT-GTCAGCATCGCCCAACTTG 6847 || || ||| ||||| || || ||| | || || | || | || | | Sbjct 407889 GTAATTCCTTCATGAGCTGAAC----GTATACATCTCCGTCTTTAGGACTACCGAGATCA 407834 Query 6848 TCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTC 6907 ||| || || || || || || |||||||| ||||| || || || ||||| |||||| Sbjct 407833 GGGTTAGCGCCTTTGCCACCTGGGAACTCCCAATCAATGTCGACACCATCGAAGAACTTC 407774 Query 6908 CACGTCTCCAGAAACTCGCGCACGCTCTGCAC-AAACACCCGACGCTTGGCGGAGTCGTG 6966 || || | || || || |||| || |||| | |||||||| |||| Sbjct 407773 CAAGTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACGATC-ACGCTTGGTTTTGTCGGT 407715 Query 6967 CATCTTGTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGATT 7026 | | ||||||| ||| | ||||| || || || || |||| | | | Sbjct 407714 GAAGAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATTGAAGGTAAGACCTTTAAGCC 407655 Query 7027 GGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGTA 7086 | || ||||| | ||||||||| || || ||||| || || ||||||| | Sbjct 407654 AGTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCA 407595 Query 7087 CGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTTT 7146 | | | |||||||| |||||||| | ||| |||| |||||| ||| || || Sbjct 407594 GGACGATAATCCCTTTTGAGGTTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTT 407535 Query 7147 GAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTTCAAACGACCCCGGCACCTGTTT 7206 ||| || || ||||| ||| || | ||| | |||| ||| ||| | | ||| Sbjct 407534 GAAGTCTTCACGGCCGCTGCATGAACGTTGTAGTGCTTGAAAACTGCCCTCAATTTCTTT 407475 Query 7207 CAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGGCT 7266 ||| ||| |||| || || || || ||||| || | || ||||| |||||||| | Sbjct 407474 CAAACTGTCATTGATGCCATCACCACCACAAATCGGAATGAAGCCGTAGAGCAAATGAGT 407415 Query 7267 GAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCCAC 7326 || || || || || || ||| | || |||| | ||||||||||| || || Sbjct 407414 CAGGTTCGGAACCGGAACGCGGTCCACAGGGAACTTTCTAGGATACACACCCCATTCGAC 407355 Query 7327 AAAGTACGCCGCCACCAC 7344 ||||| || ||||||| Sbjct 407354 GAAGTAAGCGCCCACCAC 407337 >seq762 Length=5301712 Score = 176 bits (194), Expect = 4e-39 Identities = 311/447 (70%), Gaps = 21/447 (5%) Strand=Plus/Plus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| | |||||| || | ||||||| | |||| || ||||| |||||||| | Sbjct 754187 ACTGGCCGAGATGTATGCGCCAAAAACCCGAGGAACTGGCAGAGGCCGGATTCTTCTATA 754246 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | |||||||| || || ||||||||||| ||||| || | ||||||||||| Sbjct 754247 CAGGCCAAGGTGACAAAACGAAATGCTTCTATTGCGACGGAGGGCTAAAAGATTGGGAAA 754306 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||||||||| | |||||||||||||| ||||| ||||| || Sbjct 754307 GCGATGACGTTCCGTGGGAACAGCACGCCAGATGGTTCGACCGCTGCGCGTACGTGCAAT 754366 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCGTGTTACCCGGT- 13454 | || || || | |||||| | ||||| || | |||| ||| | | || | | | Sbjct 754367 TGGTGAAAGGACGTGACTACATTCAGAAGGTTAAGTCGGAGGCCACTGCGATATCTGCTA 754426 Query 13455 GAGAACACTACCGTGTCAACA-GCCG-CGCCAGTG-TCCGAGCCTA--TACCTGAGACAA 13509 | ||| | |||| |||| | ||| || | ||| ||| || | ||| Sbjct 754427 GCGAAGA--------AGAACAGGCCGCCACCAATGATTCGA--CTAACAACGTCGCTCAA 754476 Query 13510 AAATTGAAAAAGAGCCCCAAGTGGAAGATTCGAAACTGTGCAAGATATGCTACGTAGAAG 13569 || ||| || |||| || || ||| | || || ||||| || || | Sbjct 754477 -----GAGGGCGAGAAACATTTGGATGACTCTAAAATATGTAAAATATGTTATTCCGAGG 754531 Query 13570 AGTGCATCGTGTGCTTCGTACCGTGCGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTGA 13629 || | | |||||||||||| |||||||| |||||||||||||| |||||||| ||| || Sbjct 754532 AGCGTAACGTGTGCTTCGTGCCGTGCGGCCACGTGGTGGCGTGCGCCAAGTGCGCGCTGT 754591 Query 13630 GTGTAGATAAGTGTCCGATGTGTCGCA 13656 || ||||| ||||||||||||| Sbjct 754592 CGACGGACAAGTGCCCGATGTGTCGCA 754618 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 12867 ATGTCTGACTTGCGATTGGAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCG 12926 ||| | ||| |||| ||||| | ||| |||| || ||||| ||||||| || || Sbjct 753817 ATGCCCGACATGCGTCGTGAAGAGGAACGTCTGAAAACATTTGATCAGTGGCCCGTTACG 753876 Query 12927 TTTTTGTCGCCGGAAACCATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAG 12986 |||||| |||||||| |||| || || || |||||| | ||| | |||||||| Sbjct 753877 TTTTTGACGCCGGAACAATTGGCCCGCAACGGATTCTACTACCTCGGTCGCGGCGACGAG 753936 Query 12987 GTGCGTTGTGCGTTTTGTAAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCT 13046 ||| | ||||| || ||||| || || || ||| | ||| || ||||| ||||| || Sbjct 753937 GTGTGCTGTGCTTTCTGTAAGGTAGAAATTATGAGGTGGGTCGAAGGCGACGATCCTGCC 753996 Query 13047 GCCGACCATAAGAAGTGGGCTCCCCAATGTCCGTTTGT 13084 ||||| ||| || ||||| ||||| ||||| ||||| Sbjct 753997 GCCGATCATCGGAGATGGGCGCCCCAGTGTCCCTTTGT 754034 >seq747 Length=8313734 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || ||| || ||||||||||| || || ||||| |||||||||||| Sbjct 5399037 GCCACCACGCAGTCTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCGGA 5399096 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| || | || || || ||||| || || || ||||||||||| || || ||||| Sbjct 5399097 TAGTGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAACCGCTGCTGATCCGGAGG 5399156 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| |||||| ||| ||| || || | | | | |||| | || || Sbjct 5399157 AATTCCCTCTTTGTCCTGAATCTTTGCTTTCACATTCTCAATGGTGTCAGATGCTTCAAC 5399216 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | || || || || || || || || ||||||||||| |||||| Sbjct 5399217 TTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATG 5399265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | ||| ||||| ||||| || || ||||| ||||||||||| Sbjct 5397441 GCCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 5397500 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 | | ||| | || || || ||||| || || || ||||| ||||| || || || || Sbjct 5397501 TAATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGG 5397560 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| |||||| ||| || || || | | | | |||| | || || Sbjct 5397561 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCTATGGTGTCAGATGCTTCAAC 5397620 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | || || || || || || || || |||||||||||||||||| Sbjct 5397621 TTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCATG 5397669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394865926567723