Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq472 196 4e-45 seq762 104 2e-17 seq5054 98.7 8e-16 seq747 89.7 4e-13 seq8861 86.0 5e-12 >seq472 Length=1464009 Score = 196 bits (216), Expect = 4e-45 Identities = 628/965 (65%), Gaps = 17/965 (2%) Strand=Plus/Minus Query 90990 ATAGTCAACGACTCCATCTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCATCAAA 91049 |||||| || || || || | ||| || || |||| ||||| ||||| || ||| || Sbjct 408299 ATAGTCCACCACACCGTCCTGCCAAGTTCCTTTAACTGGACCATTAGCAACTCCAGTGAA 408240 Query 91050 ATAGTTATCACCTTTGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACC 91109 | || | ||||| || || || ||||| || || |||||||| || ||||| Sbjct 408239 GGGTATGTCGTCGTTGTAGTCGTGAACTCCAGTCCAACCACGTCCGTACATAGCAACACC 408180 Query 91110 AATAATTATTTTACTAGAATCAACACCTTGTTTTGTGAGCATTTGCACGGCAT-GATGC- 91167 | || | || | | | |||||||| || |||| | | | | || | Sbjct 408179 GACAACCAGCTTTTTGGGCTGGACACCTTGG---GTCAGCAGGTACCTGATACCGAAGTC 408123 Query 91168 -GTGGTGTACAACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAA 91226 |||||||| || || || |||| || || ||||| | || || | |||| Sbjct 408122 GGTGGTGTAAGTTTCCTTAGGACTCCAAGATGGAGCATATAGAGCAGTCTGGTGTCCCAG 408063 Query 91227 ATCGGTATTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAA 91286 | | || ||||| || || || || |||||| |||| || | || | || | Sbjct 408062 AGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATAACGAAGATATGGTCCATGTA 408003 Query 91287 CTTTTGTGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCT 91346 || || || | | || | || | || ||||||||| ||||||| | ||| || Sbjct 408002 TTTCTGGGCTTCCTTGTAGTTCACGACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGA 407943 Query 91347 TGTCAATTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTC 91406 ||||| ||||| | |||| || | || || ||||||||||| | ||| || || Sbjct 407942 GGTCAACTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTC 407883 Query 91407 TTTTAGCAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGC 91466 || | | || |||| | | |||| ||| ||| || | | || ||||| Sbjct 407882 CTTCATGAGCTGAACGTATACATCTCCGTC---TTTAGGACTACCGAGATCAGGGTTAGC 407826 Query 91467 GCCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTG 91526 |||||| || || || || ||||||||||| || ||||| || || || |||||| ||| Sbjct 407825 GCCTTTGCCACCTGGGAACTCCCAATCAATGTCGACACCATCGAAGAACTTCCAAGTTTG 407766 Query 91527 CAAAAATTCTTTAACCGAATCAACGAACACGTTT---CTTCGTTTGACATCG-TGCATAA 91582 | || ||||| || || ||||||| ||| | ||| |||| ||| || | || Sbjct 407765 GAGGAAGTCTTTCACGGAGGCAACGAA-ACGATCACGCTTGGTTTTG--TCGGTGAAGAA 407709 Query 91583 AATAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGT 91642 | |||| || || | ||| ||||||||||| || || ||||| || ||||| | | Sbjct 407708 GA-AGAAGGGATCGGCCAATGTCCAGCCACCAATTGAAGGTAAGACCTTTAAGCCAGTAT 407650 Query 91643 TGGCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGG 91702 | || || ||| | ||| || ||||| || ||||| ||||||||||| | | Sbjct 407649 TCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACG 407590 Query 91703 ATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAAT 91762 ||| || ||||| ||||| || | ||| ||||| |||||||| || ||||| || || | Sbjct 407589 ATAATCCCTTTTGAGGTTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGT 407530 Query 91763 CATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGG 91822 | || || || |||| || ||||| | || |||||| || ||| ||| | Sbjct 407529 CTTCACGGCCGCTGCATGAACGTTGTAGTGCTTGAAAACTGCCCTCAATTTCTTTCAAAC 407470 Query 91823 CATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAAT 91882 || || | ||||| || || ||||| || || || ||||| | || ||| | || | Sbjct 407469 TGTCATTGATGCCATCACCACCACAAATCGGAATGAAGCCGTAGAGCAAATGAGTCAGGT 407410 Query 91883 TTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGT 91942 | || | ||| || ||| | || || || | ||||| |||||||| || |||| Sbjct 407409 TCGGAACCGGAACGCGGTCCACAGGGAACTTTCTAGGATACACACCCCATTCGACGAAGT 407350 Query 91943 ACGCG 91947 | ||| Sbjct 407349 AAGCG 407345 >seq762 Length=5301712 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 20402 TTGCGTATTAAAGGACAATGCGGTGCCCATTTTTGGTGATCTTTCGCCGGGTCGTCGCCT 20461 || |||| || ||||| || || |||||| | | ||||| || || ||||||||| Sbjct 754040 TTTCGTACAAAGGGACACTGGGGCGCCCATCTCCGATGATCGGCGGCAGGATCGTCGCCT 753981 Query 20462 TCTTGCCAATGCATAATTTCCACTTTGCAAAACGCACAGCGCACTTCGTCAGCGCGCCCC 20521 || ||| ||||||||| || || || || ||||||| ||| ||||| |||| || Sbjct 753980 TCGACCCACCTCATAATTTCTACCTTACAGAAAGCACAGCACACCTCGTCGCCGCGACCG 753921 Query 20522 AAATAATAGAACCCGTTGGTCGCCATTTGCTCAGGTGTTAAAAATGTTACGGGCCAGTTT 20581 | || ||||| |||||| |||| ||| || || || ||||| || |||||||| | Sbjct 753920 AGGTAGTAGAATCCGTTGCGGGCCAATTGTTCCGGCGTCAAAAACGTAACGGGCCACTGA 753861 Query 20582 ACAAAAGTGGTTAAACGTACGGCTTCA 20608 |||| || | | |||| | ||||| Sbjct 753860 TCAAATGTTTTCAGACGTTCCTCTTCA 753834 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 20153 AACCAACGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCA 20212 ||||| | ||||| |||||||| |||| |||||| ||||||||||||| || || || Sbjct 754343 AACCATCTGGCGTGCTGTTCCCACGGAACGTCATCGCTTTCCCAATCTTTTAGCCCTCCG 754284 Query 20213 TTGCAATAAAAACACAAAGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGCC 20272 | |||||| || || ||||| ||||| | ||||| | ||||| || || ||| Sbjct 754283 TCGCAATAGAAGCATTTCGTTTTGTCACCTTGGCCTGTATAGAAGAATCCGGCCTCTGCC 754224 Query 20273 AATTCATCGGGCCTTTGCTTCATGCTGCGCGGCCA 20307 | ||| ||||| |||| ||| | | |||||| Sbjct 754223 AGTTCCTCGGGTTTTTGGCGCATACATCTCGGCCA 754189 >seq5054 Length=501 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||||| | ||| || || |||||||| ||||| |||||||| | Sbjct 434 CCTCCTCGAAGACGTAGTACTAAGTGCAGGGTAGATTCTTTCTGAATATTGTAGTCTGAT 375 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| ||||| || |||| ||||| ||||| || || Sbjct 374 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGAGGA 315 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || |||| |||| ||||| | | ||| || || | || Sbjct 314 ATGCCTTCCTTGTCCTGGATTT-TTGCTTTGACATTTTCAATTGTATCTGAAGCTTCAAC 256 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| || | ||||||||||| || ||||| Sbjct 255 CTCAAGGGTGATTGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 208 >seq747 Length=8313734 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| | |||| || || || |||||||| || ||||||||||| | Sbjct 5397214 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5397273 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||| | |||||||| ||| |||| | || || |||||| || Sbjct 5397274 AGTGTACGGCCGTCTTCAAGCTGTTTGCCTGCAAAGATCAATCGCTGCTGATCCGGAGGA 5397333 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || ||||| ||| | | || || || | | ||| |||||| | || Sbjct 5397334 ATTCCCTCTTTATCCTGAATCT-TGGCTTTCACATTTTCAATGGTGTCAGATGCTTCAAC 5397392 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| ||||| | |||||| |||||||||||||| Sbjct 5397393 TTCTAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATTTGCAT 5397440 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| | |||| ||| || || |||||||| || ||||||||||||| Sbjct 5399038 CCACCACGCAGTCTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAT 5399097 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| | |||||||||||| |||| | | || |||||| || Sbjct 5399098 AGTGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAACCGCTGCTGATCCGGAGGA 5399157 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || ||| | |||| || || | ||| |||||| | || Sbjct 5399158 ATTCCCTCTTTGTCCTGAATCT-TTGCTTTCACATTCTCAATGGTGTCAGATGCTTCAAC 5399216 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| ||||| | |||||| ||||| || ||||| Sbjct 5399217 TTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5399264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||||| | || ||||| ||||||||||||||||||||||| | | Sbjct 4903442 CCTCCACGAAGACGCAGTACAAGATGGAGTGTGGATTCTTTTTGAATGTTGTAGTCTGAC 4903383 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||| || ||||| ||| |||| || | |||||||| || Sbjct 4903382 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 4903323 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || || | ||| || | ||| ||||| ||||| | Sbjct 4903322 ATTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCCGAAGGCTCCACT 4903263 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | |||||||| | ||||| ||||| || ||||| Sbjct 4903262 TCTAAAGTGATGGTCTTGCCGGTTAGAGTTTTCACAAAGATCTGCAT 4903216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || || |||||||| || ||||||||||| | | ||| || |||||| Sbjct 5397916 ACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGACCATCTTCA 5397975 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | |||||||||||| |||| | || || ||||| ||| | || || || || | Sbjct 5397976 AGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGA 5398035 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | | || || || | | | | |||||| | || ||| | |||||| |||| Sbjct 5398036 ATCT-TGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACTTCTAGTGTGATGGTTTT 5398094 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | |||||| ||||| |||||||| Sbjct 5398095 ACCGGTAAGTGTTTTCACAAAGATTTGCAT 5398124 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || || |||||||| || ||||||||||| | | ||| || |||||| Sbjct 5398372 ACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGACCATCTTCA 5398431 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | |||||||||||| |||| | || || ||||| ||| | || || || || | Sbjct 5398432 AGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGA 5398491 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | | || || || | | | | |||||| | || ||| | |||||| |||| Sbjct 5398492 ATCT-TGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACTTCTAGTGTGATGGTTTT 5398550 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | |||||| ||||| |||||||| Sbjct 5398551 ACCGGTAAGTGTTTTCACAAAGATTTGCAT 5398580 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| | |||| || || || |||||||| || ||||||||||| | Sbjct 5398126 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5398185 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| | |||||||||||| | || | || || ||||| ||| Sbjct 5398186 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 5398245 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || ||| | | || || || | | | | |||||| | || Sbjct 5398246 ATTCCCTCTTTGTCCTGAATCT-TGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAAC 5398304 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| ||||| | |||||| ||||| || |||||| Sbjct 5398305 TTCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398353 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| | |||| || || || |||||||| || ||||||||||| | Sbjct 5398582 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5398641 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| | |||||||||||| | || | || || ||||| ||| Sbjct 5398642 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 5398701 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || ||| | | || || || | | | | |||||| | || Sbjct 5398702 ATTCCCTCTTTGTCCTGAATCT-TGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAAC 5398760 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| ||||| | |||||| ||||| || |||||| Sbjct 5398761 TTCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398809 >seq8861 Length=554 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| | |||| || || || |||||||| || ||||||||||| | Sbjct 14 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 73 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| | |||||||||||| | || | || || ||||| ||| Sbjct 74 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 133 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || ||| | | || || || | | | | |||||| | || Sbjct 134 ATTCCCTCTTTGTCCTGAATCT-TGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAAC 192 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| ||||| | |||||| |||||||| |||||| Sbjct 193 TTCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATCTGCATT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379143059467935