Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq466 574 6e-159 seq483 125 9e-24 >seq466 Length=1632705 Score = 574 bits (636), Expect = 6e-159 Identities = 1209/1787 (68%), Gaps = 32/1787 (2%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 || |||| || ||||| |||| | || ||| ||||| || || | ||| ||||| || Sbjct 916827 TTATCCACAGTAAATTGTATGGCATTGGCTGCCGGTTTTGTTCGCAAATAATACATCCCT 916886 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||||| ||| | ||||| || ||||| ||| |||| ||| || |||| Sbjct 916887 GTTTTTAAACCCATTTTCCATGAATAGAAATGAATAGAAGTTAATTTTCCGTAGTTCGGT 916946 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | || ||||| | ||||||||||||||| || || ||||| | || |||||| Sbjct 916947 TCAGCAACGTGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCC 917006 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275 |||| ||| | || || || ||||||||||| || ||||| || || |||| | || Sbjct 917007 ATTTGTATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCCCTTATT-TC 917065 Query 62276 TTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 | || | || |||| || || |||||| || ||||| ||| || || Sbjct 917066 TGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCAT 917125 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 || |||| |||||| | | || || ||| | | ||| | ||| | || || ||||| Sbjct 917126 TTCCTCATCCCATAAATCTGCTTCTGTCAAATCACGAAGTAAATGATGATTTACAACTTG 917185 Query 62393 GAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62449 ||||||||||| || || ||| || ||||||||| || | || || | || Sbjct 917186 AAATTCTCCAGATAAAACACGTCTTTGA---TAAATATTAGAAGTGAAGGGCTCAAAAGA 917242 Query 62450 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62509 ||||||||||| ||||| ||||| ||||| ||||| ||||| || || ||||| | | Sbjct 917243 TTCATTATTTCCTAAAATCTGAGCTGTTGAGGCAGTGGGCATTGGGGCTACCAAAAGAGA 917302 Query 62510 ATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567 ||| | |||||| ||| | | || || ||||||| | ||| | ||| | ||| Sbjct 917303 ATTACGAAGACC--ATGCTTGGCAATGTTTTCTTTTAAAGCAGTCCAGTCCCATAAATCT 917360 Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACA 62627 | || | || |||| || || ||| || ||||| | Sbjct 917361 GTTGGATTTTTATTCCACATTTCGTACTGTAATATGCCTCGACTTGCAGGGCATCCTTCG 917420 Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 ||||| ||||| ||| | ||| || ||||||| |||||| ||||||| ||| || || Sbjct 917421 TATGTTTCATACACTCCATACTTTTCTGCTAGTTCACAACTTGCCTCTAGTGCTCCATAG 917480 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT-GCTTCCGGGCTATCAAATGGATA 62746 ||||| |||||||| || | | ||||| || | | ||||| || || || | || | Sbjct 917481 TAAATAGTTTCAAATATTTGTTGATTTA-ATTTAATAGCTTCTGGACTTTCGTAAGGTAA 917539 Query 62747 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 | | | |||||| || || || | ||||||||||| || || |||||||||||||| Sbjct 917540 ACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCTATGTCT 917599 Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 |||||| ||| ||||| |||| ||| |||||||| | ||| || |||||||| | Sbjct 917600 AAGATTAGATTTTTTTGCTTCCGGAACAGGGTAATAATTTACATCAATGATTTTATTCAA 917659 Query 62867 ATTT-CTGACAATTACTTTGACCA-CATCCTTCAGTTTGAGAAAATCAAATCGCCC---A 62921 |||| ||| | || ||| | | | || || | ||| ||| | | || | Sbjct 917660 ATTTTCTGTTA--TAGTTTTAGTAACTTCTTTTAATTTCTTAAAGTTATATGTTTTGTTA 917717 Query 62922 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCA 62981 || |||||||| || | || | ||| || | || || || || || |||| | || Sbjct 917718 TCATCAACAAACATATTTAGCGCTATAGAGGCTAAGTTGCATACTGCCACTTCATCATCA 917777 Query 62982 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 63041 | ||||| | ||| |||||||| || |||||||| || || || |||||||||| Sbjct 917778 GATGTATATTCAACTATTTCAGTGCACAGGTTACTACATTTTATGGTACCTAAATTTTTC 917837 Query 63042 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63101 |||||||| ||| | ||||| | ||| ||| | | ||| ||||||||||||| || | Sbjct 917838 TGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACT 917897 Query 63102 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTA--TCTCC 63159 |||| |||||| || |||||||| | ||| | ||| ||| | | ||| | ||| Sbjct 917898 TGAGCTTCTATTATTGCTTTCCAAAGAACTTGTGCCCTTACTT--GTTTTACAAATCTAT 917955 Query 63160 TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 ||||| |||| ||| ||| || ||| || || | ||||||| | | || | Sbjct 917956 TTTCTTTTTCATATGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAACC 918015 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 || || |||| |||||||| | | ||| | || |||| | |||| |||||| | Sbjct 918016 CTGGGCAATCATGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGA 918075 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 | |||||||| ||||| | || ||| || || || | | ||| || ||||| | Sbjct 918076 AAAGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCAG 918135 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 | || || || | ||| | ||| | | ||||| | ||||||||||||||| || | | Sbjct 918136 TGTTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCACGGTTCCAAATAGACTG 918195 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | ||||||| || || || ||||| ||||| | |||||||| || ||||| |||| Sbjct 918196 CAAAAGCTCCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAA 918255 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 ||| |||||||| | || ||| ||||||| |||||| || || | ||||| || Sbjct 918256 CTCGTAACATTGGTACAAGACCATTTGATACACCATTTGTTCCTGCTATATAAGTACCTT 918315 Query 63520 TGGCACGAATATTACT--AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 | || | ||| | | | || | ||| ||||| ||||| |||||| || || || Sbjct 918316 TAGCCCTTATA-CAGTGGACATG-GACACCAATTCCACCTGCAGATTTAGATATCAAAGC 918373 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 || | ||||| || || || || ||||| ||||| ||||| |||| | |||||| Sbjct 918374 ACACTGCTTTAAGGTATCGTAAATTCCTTCAATGCTGTCATCTTTCATTGCCACTAGAAA 918433 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 ||| || | |||| | || | |||| | || |||||||| || || || || Sbjct 918434 ACATGATGATAGTTGGGGGCGTGGAGTTGCAGCTGAGAATAAGGTTGGGCTGGCATGAGT 918493 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 || |||| |||||||||| ||||| || | || |||| || ||||| ||| Sbjct 918494 GAAATATTTCTCAGAAAGTAAGTTGTATGTATTTATGGCTGCATCAATATCTTCACCATG 918553 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAA 63804 |||||| | || || ||||| | ||| || ||||||| |||| ||| Sbjct 918554 AATTCCAATTGACACTCGCATCAGCATATGTTGAGGTCGTTCAGCAA 918600 >seq483 Length=1310704 Score = 125 bits (138), Expect = 9e-24 Identities = 164/226 (73%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || ||| | ||| ||| || || ||||| ||||| ||||| ||||||| Sbjct 173492 CCTCATCCCTGGAAATAAGTTCATTACTGAATGTAAGTCCCGGCATAAGGCCCCGCTTTT 173433 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||||||| || || || || |||||||||||||| || ||||||| Sbjct 173432 TGAGCCAGAAGATGGAAGCAAAACTGCCTGAGAAAAAGATTCCTTCTACAGCTGCAAAGG 173373 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33778 ||| || || || || || | || ||| || ||||||| | |||||||||| Sbjct 173372 CAACAATCCTTTCACC--AAATGTTGCAGTCTTGCTTGCAATCCACTGTAGAGCCCAATC 173315 Query 33779 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 || ||||| |||||||| || | || || | |||||||| ||| Sbjct 173314 TGCTTTCTTCTTTACACAGGGAAGAGTCTCAACCGCATTAAACAGA 173269 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||||||| ||||||| ||||| ||||| ||||| || || ||||||||||| ||||| Sbjct 166351 ATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCCTC 166292 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 || | || |||||| |||||| || | || |||||||| || || ||||| Sbjct 166291 AGTGACTTGAACTTCTTGTGAAAATCTCTCAACCAAGTTTTCATTTACAATGCCATCTGA 166232 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026 || ||||| || || | ||||| || || |||| Sbjct 166231 AGCCGCAAAGAAAGCAAGGACATGCTTGATGAAAT 166197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629475427970640