Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq466 619 1e-172 seq483 100 3e-16 >seq466 Length=1632705 Score = 619 bits (686), Expect = 1e-172 Identities = 1223/1782 (69%), Gaps = 38/1782 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||| | ||| | ||||| |||||||| || ||||||||| || ||| Sbjct 916830 TCCACAGTAAATTGTATGGCATTGGCTGCCGGTTTTGTTCGCAAATAATACATCCCTGTT 916889 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| |||| | ||||| || ||||| ||| || | |||| |||| | || | | Sbjct 916890 TTTAAACCCATTTTCCATGAATAGAAATGAATAGAAGTTAATTTTCCGTAGTTCGGTTCA 916949 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | | ||| | | |||||||||||||| ||||| || || | || || |||||| Sbjct 916950 GCAACGTGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCCATT 917009 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | || | |||||| || || |||||||| || ||||||| | |||| || | Sbjct 917010 TGTATTGTTG--TTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCCCTTAT-TTCT 917066 Query 37028 CT-GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 | |||| | || | || ||| ||||| ||||||| | ||| ||| || || Sbjct 917067 GTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCATT 917126 Query 37084 TCATTATTCCACATATTT-CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 || | || ||| | || | || || | | || | | || || |||||||||| || Sbjct 917127 TCCTCATCCCATAAATCTGCTTCTG-TCAAATCACGAAGTAAATGATGATTTACAACTTG 917185 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| ||||||||||| || | |||| ||| ||||| ||| | || |||| || || Sbjct 917186 AAATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAGGGCTCAAAAGATTC 917245 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 |||||| | ||| || |||| ||| || ||||| |||||||| |||| | ||| ||| Sbjct 917246 ATTATTTCCTAAAATCTGAGCTGTTGAGGCAGTGGGCATTGGGGCTACCAAAAGAGAATT 917305 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 | | ||||| | ||| | | ||||| || |||| ||||||||||||||||| Sbjct 917306 ACGAAGACCATGCTTGGCAATGTTTTCTTTTAAAGCAGTCCAGTCCCATAAATCTGTTGG 917365 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTT-ATATG 37381 || || |||||| || || |||| || ||| ||| || || | ||| || |||| Sbjct 917366 ATTTTTATTCCACATTTCGTACTGTAATATGCCTCGACTTGCAGG-GCATCCTTCGTATG 917424 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 | ||||| ||| || ||| |||||||| ||||| | |||||||| |||| || | Sbjct 917425 TTTCATACACTCCATACTTTTCTGCTAGTTCACAACTTGCCTCTAGTGCTCCATAGTAAA 917484 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 | ||||| || |||||| ||||||| | | |||||| || ||| | | | | || Sbjct 917485 TAGTTTCAAATATTTGTTGATTTAATTTAATAGCTTCTGGACTTTCGTAAGGTAAACGCA 917544 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||| ||||| ||||||| | ||| |||||||| || || || ||||||||| | || Sbjct 917545 TTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCTATGTCTAAGAT 917604 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 ||||| | | ||| || || |||||||| | ||| || |||||||| | ||||| Sbjct 917605 TAGATTTTTTTGCTTCCGGAACAGGGTAATAATTTACATCAATGATTTTATTCAAATTTT 917664 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAA---TACGTTATTATTAA 37678 || |||| |||| | | | || || | || || | | ||||| || || Sbjct 917665 CTGTTATAGTTTTAGTAACTTCTTTTAATTTCTTAAAGTTATATGTTTTGTTATCATCAA 917724 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738 |||| || | | || ||||| ||| || ||||| || |||||||| || || Sbjct 917725 CAAACATATTTAGCGCTATAGAGGCTAAGTTGCATACTGCCACTTCATCATCAGATGTAT 917784 Query 37739 ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGG 37798 ||| | || || || || || ||||| || | || || || ||||| | ||||| Sbjct 917785 ATTCAACTATTTCAGTGCACAGGTTACTACATTTTATGGTACCTAAATTTTTCTGATTAC 917844 Query 37799 ATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCT 37858 |||| ||||||| ||||||||| ||| || || || || || |||| |||||| | Sbjct 917845 TTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACTTGAGCTT 917904 Query 37859 CGATAATAGATTTCCATA-AACTTCTTGCTTTAACGATCGCTTT---AAt-ttttttCTT 37913 | || || | |||||| | ||||| | | ||| | | ||| ||| | ||||||| Sbjct 917905 CTATTATTGCTTTCCAAAGAACTTGTGCCCTTA---CTTGTTTTACAAATCTATTTTCTT 917961 Query 37914 TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTG 37972 |||| ||| | |||||| | ||| || || ||||| ||| || ||| |||| Sbjct 917962 --TTTCATATGTTTCATATAAGGATTCAAATTCTTTTCCCCA-ACAGTCAGCTAACCCTG 918018 Query 37973 GACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATA 38032 | || || |||||||| || | |||| | |||| ||||| || | || ||| || | Sbjct 918019 GGCAATCATGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGAAAA 918078 Query 38033 AATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACAT 38092 |||||||| ||| |||||| ||| | || ||| | |||||| || || | Sbjct 918079 GATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCC-AGTG 918137 Query 38093 TCTTTCTT--AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 | |||||| || || || || || |||||||| || ||||| ||||| | ||| | | Sbjct 918138 TTTTTCTTTAAATCTAAG-AATTCAAATATATCGGCATGCCACGGTTCCAAATAGACTGC 918196 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | ||||| || | |||| |||||| |||| || ||||||| |||| ||||| || | Sbjct 918197 AAAAGCTCCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAAC 918256 Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270 || |||||| ||||| | |||||| ||| || ||| | || | |||||||||||| || Sbjct 918257 TCGTAACATTGGTACAAGACCATTTGATACACCATTTGTTCCTGCTATATAAGTACCTTT 918316 Query 38271 AGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCG 38328 ||| | ||| | | || |||| || |||||||||||| ||| ||||| ||||| Sbjct 918317 AGCCCTTATACAGTGGACATGGACA--CCAATTCCACCTGCAGATTTAGATATCAAAGCA 918374 Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388 || || ||||| ||||| | || ||||| || |||||||| || |||| | || |||| Sbjct 918375 CACTGCTTTAAGGTATCGTAAATTCCTTCAATGCTGTCATCTTTCATTGCCACTAGAAAA 918434 Query 38389 CAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448 || || | ||| || ||||||| | || ||||| || || ||||| || Sbjct 918435 CATGATGATAGTTGGGGGCGTGGAGTTGCAGCTGAGAATAAGGTTGGGCTGGCATGAGTG 918494 Query 38449 AACCATTTTTCCGACAAATAA-TTATATGTTTCTATTACATCATCTATATCACCGCCGTG 38507 || |||| || || || ||| || ||||| | ||| | |||| ||||| | || || Sbjct 918495 AAATATTTCTCAGA-AAGTAAGTTGTATGTATTTATGGCTGCATCAATATCTTCACCATG 918553 Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 ||| || | || || | ||| ||||||||||| |||| ||| Sbjct 918554 AATTCCAATTGACACTCGCATCAGCATATGTTGAGGTCGTTC 918595 >seq483 Length=1310704 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || |||||||| | | ||||||||| ||||||| ||||||||| || Sbjct 166381 ATCTCTGATGTAGGTATCTATAAGCAGGGAATACATTTCAGAATGAACATTTTCCATGGC 166322 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||| || || ||||||||||||| |||||| | || || || ||||||| || Sbjct 166321 TATCTGGAAGCCATAGAAACATCTTGCCTCAGTGACTTGAACTTCTTGTGAAAATCTCTC 166262 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | || || ||||||||||| ||||| || ||||| || || || | ||| || || Sbjct 166261 AACCAAGTTTTCATTTACAATGCCATCTGAAGCCGCAAAGAAAGCAAGGACATGCTTGAT 166202 Query 12070 AAA 12072 || Sbjct 166201 GAA 166199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || ||||||||| ||||| | ||| ||||| | || || ||||| | ||| || || Sbjct 173478 ATAAGTTCATTACTGAATGTAAGTCCCGGCATAAGGCCCCGCTTTTTGAGCCAGAAGATG 173419 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || || ||||| || ||||||||||| || || | ||||| Sbjct 173418 GAAGCAAAACTGCCTGAGAAAAAGATTCCTTCTACAGCTGCAAAGGCAACAATCCTTTCA 173359 Query 11786 CCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| | | | | ||||| | ||||| | | |||||||| |||||||| ||||| Sbjct 173358 CCAAATGTTGCAGTCTTGCTTGCAATCCACTGTAGAGCCCAATCTGCTTTCTTCTTTACA 173299 Query 11843 CA 11844 || Sbjct 173298 CA 173297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468270256332720