Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq466 583 1e-161 seq483 125 9e-24 >seq466 Length=1632705 Score = 583 bits (646), Expect = 1e-161 Identities = 1210/1784 (68%), Gaps = 34/1784 (2%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 || |||| || ||||| |||| | || ||| ||||| || || | ||| ||||| || Sbjct 916827 TTATCCACAGTAAATTGTATGGCATTGGCTGCCGGTTTTGTTCGCAAATAATACATCCCT 916886 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||||| ||| | ||||| || ||||| ||| |||| ||| || |||| Sbjct 916887 GTTTTTAAACCCATTTTCCATGAATAGAAATGAATAGAAGTTAATTTTCCGTAGTTCGGT 916946 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | || ||||| | ||||||||||||||| || || ||||| | || |||||| Sbjct 916947 TCAGCAACGTGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCC 917006 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 65068 |||| ||| | || || || ||||||||||| || ||||| || || |||| | || Sbjct 917007 ATTTGTATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCCCTTATT-TC 917065 Query 65069 TTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 | || | || |||| || || |||||| || ||||| ||| || || Sbjct 917066 TGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCAT 917125 Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 65185 || |||| |||||| | | || || ||| | | ||| | ||| |||| || ||||| Sbjct 917126 TTCCTCATCCCATAAATCTGCTTCTGTCAAATCACGAAGTAAATGATGATTTACAACTTG 917185 Query 65186 AAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 65242 |||||||||||| || || ||| || ||||||||| || | || || | ||| Sbjct 917186 AAATTCTCCAGATAAAACACGTCTTTGA---TAAATATTAGAAGTGAAGGGCTCAAAAGA 917242 Query 65243 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 65302 ||||||||||| ||||| ||||| ||||| ||||| ||||| || || ||||| | | Sbjct 917243 TTCATTATTTCCTAAAATCTGAGCTGTTGAGGCAGTGGGCATTGGGGCTACCAAAAGAGA 917302 Query 65303 ATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 65360 ||| | |||||| ||| | | || || ||||||| || ||| | ||| | ||| Sbjct 917303 ATTACGAAGACC--ATGCTTGGCAATGTTTTCTTTTAAAGCAGTCCAGTCCCATAAATCT 917360 Query 65361 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 65420 | || |||| || || ||| || ||||| | Sbjct 917361 GTTGGATTTTTATTCCACATTTCGTACTGTAATATGCCTCGACTTGCAGGGCATCCTTCG 917420 Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 ||||| || || ||| | ||| || |||||||||||||| ||||||| ||| || || Sbjct 917421 TATGTTTCATACACTCCATACTTTTCTGCTAGTTCACAACTTGCCTCTAGTGCTCCATAG 917480 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTATCAAATGGATA 65539 ||||| ||||| || || | | ||||| || | | ||||| | || || | || | Sbjct 917481 TAAATAGTTTCAAATATTTGTTGATTTA-ATTTAATAGCTTCTGGACTTTCGTAAGGTAA 917539 Query 65540 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 65599 | | | |||||| || || || | ||||||||||| || || |||||||||||||| Sbjct 917540 ACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCTATGTCT 917599 Query 65600 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 65659 |||||| ||| ||||| |||| ||| |||||||| | ||| || |||||||| | Sbjct 917600 AAGATTAGATTTTTTTGCTTCCGGAACAGGGTAATAATTTACATCAATGATTTTATTCAA 917659 Query 65660 ATTT-CTGACAATTACTTTGACCA-CATCCTTCAGTTTGAGAAAATCAAATCGCTC---A 65714 |||| ||| | || ||| | | | || || | ||| ||| | | || | | Sbjct 917660 ATTTTCTGTTA--TAGTTTTAGTAACTTCTTTTAATTTCTTAAAGTTATATGTTTTGTTA 917717 Query 65715 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 65774 || |||||||| || | || | ||| || | || || || || || |||| | || Sbjct 917718 TCATCAACAAACATATTTAGCGCTATAGAGGCTAAGTTGCATACTGCCACTTCATCATCA 917777 Query 65775 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 65834 | ||||| | ||| |||||||| || |||||||| || ||||| |||||||||| Sbjct 917778 GATGTATATTCAACTATTTCAGTGCACAGGTTACTACATTTTATGGTACCTAAATTTTTC 917837 Query 65835 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 65894 |||||||| ||| | ||||| | ||| ||| | | ||| ||||||||||||| || | Sbjct 917838 TGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACT 917897 Query 65895 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTA--TCTCT 65952 |||| |||||| || |||||||| | ||| | ||| ||| | | ||| | ||| | Sbjct 917898 TGAGCTTCTATTATTGCTTTCCAAAGAACTTGTGCCCTTACTT--GTTTTACAAATCTAT 917955 Query 65953 TTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 66012 ||||| |||| ||| | ||| || ||| || || | ||||||| | | || | Sbjct 917956 TTTCTTTTTCATATGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAACC 918015 Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 66072 | || || |||| |||||||| | | ||| | || |||| | |||| |||||| | Sbjct 918016 CTGGGCAATCATGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGA 918075 Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAATAAAT-CTCTGGTTCTATGTTCCTCGTTTCCT 66131 | |||||||| ||||| | || ||||| || | | |||| | ||| || ||||| Sbjct 918076 AAAGATCAGGTATCCACAATGC-ATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCA 918134 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 || || || || | ||| | ||| | | ||||| ||||||||||||||| || | Sbjct 918135 GTGTTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCACGGTTCCAAATAGACT 918194 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | ||||||| || || || ||||| ||||| | |||||||| || ||||| ||| Sbjct 918195 GCAAAAGCTCCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAA 918254 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 |||| |||||||| | || |||||| ||| |||||| || || | ||||| | || Sbjct 918255 ACTCGTAACATTGGTACAAGACCATTTGATACACCATTTGTTCCTGCTATATAAGTACCT 918314 Query 66312 CTTGCACGAATATTACT--AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | || | ||| | | | || | ||| ||||| ||||| |||||| || || | Sbjct 918315 TTAGCCCTTATA-CAGTGGACATG-GACACCAATTCCACCTGCAGATTTAGATATCAAAG 918372 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | || | ||||| ||||| || || || || || || ||||| |||| | ||||| Sbjct 918373 CACACTGCTTTAAGGTATCGTAAATTCCTTCAATGCTGTCATCTTTCATTGCCACTAGAA 918432 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 |||| || | |||| | || |||| | || |||||||| || || || | Sbjct 918433 AACATGATGATAGTTGGGGGCGTGGAGTTGCAGCTGAGAATAAGGTTGGGCTGGCATGAG 918492 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 66549 | || |||| |||||||||| ||||| || | || |||| || ||||| || Sbjct 918493 TGAAATATTTCTCAGAAAGTAAGTTGTATGTATTTATGGCTGCATCAATATCTTCACCAT 918552 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 ||||||| | || || ||||| | ||| || ||||||| |||| Sbjct 918553 GAATTCCAATTGACACTCGCATCAGCATATGTTGAGGTCGTTCA 918596 >seq483 Length=1310704 Score = 125 bits (138), Expect = 9e-24 Identities = 146/195 (75%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || ||||| ||||| ||||| |||||||| ||||| || ||||| ||||| || Sbjct 173463 AATGTAAGTCCCGGCATAAGGCCCCGCTTTTTGAGCCAGAAGATGGAAGCAAAACTGCCT 173404 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--C 36326 || || || ||||||||||| || |||||||||| || || || ||| | ||| | Sbjct 173403 GAGAAAAAGATTCCTTCTACAGCTGCAAAGGCAACAATCCTTTCACCAAATGTTGCAGTC 173344 Query 36327 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | | || ||||||| | |||||||||| || ||||| |||||||| || | ||||| Sbjct 173343 TTGCTTGCAATCCACTGTAGAGCCCAATCTGCTTTCTTCTTTACACAGGGAAGAGTCTCA 173284 Query 36386 ATAGCATTAAAGAGA 36400 | |||||||| ||| Sbjct 173283 ACCGCATTAAACAGA 173269 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 ||||||||| ||||||| ||||| ||||| || || || || ||||||||||| ||||| Sbjct 166351 ATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCCTC 166292 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 || | || |||||| |||||| || | || |||||||| || || || || Sbjct 166291 AGTGACTTGAACTTCTTGTGAAAATCTCTCAACCAAGTTTTCATTTACAATGCCATCTGA 166232 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 36602 || ||||| || || | ||||| || || |||| Sbjct 166231 AGCCGCAAAGAAAGCAAGGACATGCTTGATGAAAT 166197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657815222944920