Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq472 219 4e-52 seq747 113 4e-20 seq466 105 7e-18 seq5054 100 3e-16 >seq472 Length=1464009 Score = 219 bits (242), Expect = 4e-52 Identities = 355/503 (71%), Gaps = 6/503 (1%) Strand=Plus/Minus Query 20797 CCGACATTGGGGTTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCA 20856 |||| || ||||| ||||| ||||| || || |||||||||||||||||||| ||||| Sbjct 407842 CCGAGATCAGGGTTAGCGCCTTTGCCACCTGGGAACTCCCAATCAATGTCGACACCATCG 407783 Query 20857 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGA-TAAACGTTTGGCGCACGAT 20915 ||||| ||||| |||| || | |||| || || | | ||||| | ||| | | Sbjct 407782 AAGAACTTCCAAGTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACG-ATCACGCTTGGT 407724 Query 20916 CTTGTC-GTGCATATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACA 20974 ||||| ||| | | ||| || || || | | ||||||||| || || || ||||| | Sbjct 407723 TTTGTCGGTGAAGA-AGAAGAAGGGATCGGCCAATGTCCAGCCACCAATTGAAGGTAAGA 407665 Query 20975 CTTTGAGATGCGGGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACG 21034 | || | | ||||| |||| ||| || || || ||||| |||||||| | Sbjct 407664 CCTTTAAGCCAGTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGG 407605 Query 21035 GTTCGTTCCATG-CGCTGACACCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGA 21093 | |||||||| | || | | ||||| || |||||||| | ||||||||| |||||||| Sbjct 407604 GCTCGTTCCAGGACGATAATCCCTTT-TGAGGTTTCTGCAGGGCCGCCCAGGGATCGTGG 407546 Query 21094 ATGGCCACCTTAAAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCC 21153 || | ||||| ||||| ||||||| ||| |||||||| | |||| ||||||||| Sbjct 407545 ATAGAAACCTTGAAGTCTTCACGGCCGCTGCATGAACGTTGTAGTGCTTGAAAACTGCCC 407486 Query 21154 GGGACACTTTTGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTAC 21213 | ||| | || |||||||| || || || || || || | ||| ||||| Sbjct 407485 TCAATTTCTTTCAAACTGTCATTGATGCCATCACCACCACAAATCGGAATGAAGCCGTAG 407426 Query 21214 AACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACA 21273 | |||||| | || |||||| || || || || || |||| | ||||||||| Sbjct 407425 AGCAAATGAGTCAGGTTCGGAACCGGAACGCGGTCCACAGGGAACTTTCTAGGATACACA 407366 Query 21274 CCCCATTCGACAAAGTATGCTCC 21296 ||||||||||| ||||| || || Sbjct 407365 CCCCATTCGACGAAGTAAGCGCC 407343 >seq747 Length=8313734 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||||| ||| || ||||| || | ||||| || |||||||| || || || | Sbjct 4903670 CCTCCTCGTAGACGTAACACTAAATGGAGTGTAGATTCCTTTTGAATATTGTAGTCTGAC 4903611 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| ||||| || |||||| |||| ||||| || ||||| ||||| Sbjct 4903610 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 4903551 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | || | |||||| | | || || Sbjct 4903550 ATTCCTTCTTTGTCTTGGATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCTACT 4903491 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| ||||||| ||||| ||||| || ||||| Sbjct 4903490 TCCAAAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAGATCTGCAT 4903444 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| || || || || | ||||| ||||||||||| || |||||| Sbjct 5399494 CCACCTCTCAGACGTAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGGAT 5399553 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | |||||| || ||||| ||||| | ||||| || |||||||| ||||| Sbjct 5399554 AATGTCCGTCCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGA 5399613 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| |||||| ||||| | ||| | ||||||| | || || Sbjct 5399614 ATGCCCTCTTTGTC-TTGAATTTTTGCTTTTACATTTTCTATGGTGTCGGATGCTTCGAC 5399672 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || | |||||||| || || ||||| Sbjct 5399673 TTCTAATGTTATGGTTTTACCAGTGAGAGTTTTTACAAAAATCTGCAT 5399720 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | || | || || |||||||||||||| || || Sbjct 4903443 GCCTCCACGAAGACGCAGTACAAGATGGAGTGTGGATTCTTTTTGAATGTTGTAGTCTGA 4903384 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || |||||| |||| ||||| || ||||| ||||| Sbjct 4903383 CAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGG 4903324 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| || || | | || | |||||| | |||||||| Sbjct 4903323 AATTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCCGAAGGCTCCAC 4903264 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | ||||| || || || ||||| Sbjct 4903263 TTCTAAAGTGATGGTCTTGCCGGTTAGAGTTTTCACAAAGATCTGCAT 4903216 >seq466 Length=1632705 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| || || ||||| || |||||||| || | |||| || Sbjct 1583297 CAAAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAAAGAGTGCGGCCATC 1583356 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | ||||| || ||| |||| |||||||| || || ||||| || ||||| ||||| Sbjct 1583357 TTCTAATTGTTTCCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTC 1583416 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 |||||| ||| | | ||| | ||||||| | |||||||| | || | || Sbjct 1583417 TTGGATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACCTCCAATGTAATGGT 1583476 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || || | ||||| |||||||||||||| Sbjct 1583477 CTTCCCCGTAAGGGTTTTGACGAATATTTGCAT 1583509 >seq5054 Length=501 Score = 100 bits (110), Expect = 3e-16 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||||| || | ||||||||||| || ||||| || || | Sbjct 206 CCACCACGGAGACGCAGTACTAAATGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 147 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || || | |||||| || ||| |||| ||||| |||||||| ||||| Sbjct 146 AGGGTGCGTCCA-TCCTCCAACTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGG 88 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| |||||| ||| | | || | ||| || | |||||| || Sbjct 87 -ATCCCTTCCTTGTCTTGGATTTTGGCTTTCACATTCTCAATTGTATCTGAGGGCTCGAC 29 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCA 139742 |||| || | |||||||| |||| Sbjct 28 TTCAAGAGTAATTGTCTTGCCAGTCA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495794494629600