Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq466 655 0.0 seq483 134 2e-26 >seq466 Length=1632705 Score = 655 bits (726), Expect = 0.0 Identities = 1226/1784 (69%), Gaps = 34/1784 (2%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 || |||| || ||||| |||| | || ||| ||||| || || | ||| ||||| || Sbjct 916827 TTATCCACAGTAAATTGTATGGCATTGGCTGCCGGTTTTGTTCGCAAATAATACATCCCT 916886 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||||| ||| | ||||| |||||||| ||| |||| ||| || |||| Sbjct 916887 GTTTTTAAACCCATTTTCCATGAATAGAAATGAATAGAAGTTAATTTTCCGTAGTTCGGT 916946 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | || ||||| | ||||||||||||||| || || ||||| | || |||||| Sbjct 916947 TCAGCAACGTGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCC 917006 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947 |||| ||| | || || || ||||||||||| || ||||| || || ||| || || Sbjct 917007 ATTTGTATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCCCTT-ATTTC 917065 Query 78948 TTCTGGAAGGTTT---GTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 | || | || |||| || || |||||| || ||||| ||| || || Sbjct 917066 TGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCAT 917125 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 || |||| |||||| | | || || ||| | | ||| | ||| |||| || ||||| Sbjct 917126 TTCCTCATCCCATAAATCTGCTTCTGTCAAATCACGAAGTAAATGATGATTTACAACTTG 917185 Query 79065 AAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGA 79121 |||||||||||| || || ||| || ||||||||| || | || || | || Sbjct 917186 AAATTCTCCAGATAAAACACGTCTTTGA---TAAATATTAGAAGTGAAGGGCTCAAAAGA 917242 Query 79122 TTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACT 79181 |||||||||||| ||||| ||||| ||||| || || ||||| || || ||||| | | Sbjct 917243 TTCATTATTTCCTAAAATCTGAGCTGTTGAGGCAGTGGGCATTGGGGCTACCAAAAGAGA 917302 Query 79182 ATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 ||| | |||||| ||| | | || || ||||||| || ||| ||||| | ||| Sbjct 917303 ATTACGAAGACC--ATGCTTGGCAATGTTTTCTTTTAAAGCAGTCCAGTCCCATAAATCT 917360 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTG 79299 | || |||||| | || || |||| || || ||| || ||||| | Sbjct 917361 GTTGGATTTTTATTCCACATTTCGTACTGTAATATGCCTCGACTTGCAGGGCATCCTTCG 917420 Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||||||||| ||| | |||||| |||| ||||||||| ||||||| |||||| || Sbjct 917421 TATGTTTCATACACTCCATACTTTTCTGCTAGTTCACAACTTGCCTCTAGTGCTCCATAG 917480 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCTAGGCTATCAAATGGATA 79418 ||||| ||||| || || | | ||| | || | | |||||| | || || | || | Sbjct 917481 TAAATAGTTTCAAATATTTGTTGATTTA-ATTTAATAGCTTCTGGACTTTCGTAAGGTAA 917539 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | | | |||||| || || || | ||||||||||| || || |||||||||||||| Sbjct 917540 ACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCTATGTCT 917599 Query 79479 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 79538 |||||| ||| ||||| |||| ||| |||||||| | ||| || |||||||| | Sbjct 917600 AAGATTAGATTTTTTTGCTTCCGGAACAGGGTAATAATTTACATCAATGATTTTATTCAA 917659 Query 79539 A-TTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGT---CCAT 79594 | || ||| ||| ||| || || |||| ||| ||| | | || | || Sbjct 917660 ATTTTCTG-TTATAGTTTTAGTAACTTCTTTTAATTTCTTAAAGTTATATGTTTTGTTAT 917718 Query 79595 CTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 79654 | |||||||| || | ||| | ||| || | || || || || || |||| | || Sbjct 917719 CATCAACAAACATATTTAGCGCTATAGAGGCTAAGTTGCATACTGCCACTTCATCATCAG 917778 Query 79655 CCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714 | ||||| | |||||||||||| ||||||||||| || ||||| |||||||||| | Sbjct 917779 ATGTATATTCAACTATTTCAGTGCACAGGTTACTACATTTTATGGTACCTAAATTTTTCT 917838 Query 79715 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCT 79774 ||||||| ||| | ||||| | ||| ||| | | ||| | ||||||||||| || | | Sbjct 917839 GATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACTT 917898 Query 79775 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA----TTATAGACTTGTATCTC 79830 ||| |||||| || |||||||| | ||| | ||| ||| || || | |||| Sbjct 917899 GAGCTTCTATTATTGCTTTCCAAAGAACTTGTGCCCTTACTTGTTTTACA----AATCTA 917954 Query 79831 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAAT 79890 |||||| |||| ||| | |||||| ||| || || | ||||||| || |||| Sbjct 917955 TTTTCTTTTTCATATGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAAC 918014 Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || || | ||||||||| | | ||| | ||||||| | |||| |||||| Sbjct 918015 CCTGGGCAATCATGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATG 918074 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || |||||||| ||||| | || ||| || || |||| | || || ||||| Sbjct 918075 AAAAGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCA 918134 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 || || || || | ||| | ||| | | ||||| | ||||||||||||||| || | Sbjct 918135 GTGTTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCACGGTTCCAAATAGACT 918194 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | |||| || || || || ||||| ||||| | |||||||| || ||||| ||| Sbjct 918195 GCAAAAGCTCCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAA 918254 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 |||| |||||||| | || |||||| ||| |||||| || || | ||||| | || Sbjct 918255 ACTCGTAACATTGGTACAAGACCATTTGATACACCATTTGTTCCTGCTATATAAGTACCT 918314 Query 80191 CTGGCACGAATATTACT--AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 | || | ||| | | | || | ||| ||||| ||||| |||||| || || | Sbjct 918315 TTAGCCCTTATA-CAGTGGACATG-GACACCAATTCCACCTGCAGATTTAGATATCAAAG 918372 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 | || | ||||| ||||| || || || || ||||| ||||| |||| | ||||| Sbjct 918373 CACACTGCTTTAAGGTATCGTAAATTCCTTCAATGCTGTCATCTTTCATTGCCACTAGAA 918432 Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368 |||| || | |||| | || |||| | || |||||||| || || || | Sbjct 918433 AACATGATGATAGTTGGGGGCGTGGAGTTGCAGCTGAGAATAAGGTTGGGCTGGCATGAG 918492 Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 80428 | || |||| ||||| |||| ||||| || | || |||| || ||||| || Sbjct 918493 TGAAATATTTCTCAGAAAGTAAGTTGTATGTATTTATGGCTGCATCAATATCTTCACCAT 918552 Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCA 80472 ||||||| | | || ||||| | ||| || ||||||| |||| Sbjct 918553 GAATTCCAATTGACACTCGCATCAGCATATGTTGAGGTCGTTCA 918596 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 80687 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAAT 80746 ||||||||||||| || |||| ||||||| || | ||||| || | || ||||||| Sbjct 919604 GTTTTTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCTGCAAGAACAGCATAAT 919663 Query 80747 CTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 80806 ||||||| | ||||| || || ||| | || || || ||| | |||| ||| || | Sbjct 919664 CTGGATGATCGGTAGTCATTGTAGCAGCTGTCTCTGCAGCAAGATTATCCAGTTCCACAG 919723 Query 80807 TTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 |||| ||||| || ||||| | |||||| || Sbjct 919724 TTGTCACTCCCGAGTAGATTCCATTGATAACTTT 919757 >seq483 Length=1310704 Score = 134 bits (148), Expect = 2e-26 Identities = 166/226 (73%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||| ||||| || || || ||||| ||||| ||||| ||||||| Sbjct 173492 CCTCATCCCTGGAAATAAGTTCATTACTGAATGTAAGTCCCGGCATAAGGCCCCGCTTTT 173433 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| ||||| || || || |||||||||||||| || ||||||| Sbjct 173432 TGAGCCAGAAGATGGAAGCAAAACTGCCTGAGAAAAAGATTCCTTCTACAGCTGCAAAGG 173373 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 50156 |||||| || || || || || || ||| || ||||||| | |||||||||| Sbjct 173372 CAACAATCCTTTCACC--AAATGTTGCAGTCTTGCTTGCAATCCACTGTAGAGCCCAATC 173315 Query 50157 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 || ||||| |||||||| || | || || | |||||||| ||| Sbjct 173314 TGCTTTCTTCTTTACACAGGGAAGAGTCTCAACCGCATTAAACAGA 173269 Score = 104 bits (114), Expect = 3e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||||||| ||||||| ||||| ||||| ||||| || || ||||||||||| ||||| Sbjct 166351 ATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCCTC 166292 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 || | || |||||| |||||| ||| | || |||||||| || || || || Sbjct 166291 AGTGACTTGAACTTCTTGTGAAAATCTCTCAACCAAGTTTTCATTTACAATGCCATCTGA 166232 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGT 50406 || ||||| || || | ||||| || || |||||| Sbjct 166231 AGCCGCAAAGAAAGCAAGGACATGCTTGATGAAATGT 166195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717878573539320