Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq466 594 7e-165 seq483 123 3e-23 >seq466 Length=1632705 Score = 594 bits (658), Expect = 7e-165 Identities = 1204/1780 (68%), Gaps = 26/1780 (1%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 || |||| ||||| || |||| | || ||| | ||| || || | ||| ||||| ||| Sbjct 916827 TTATCCACAGTAAATTGTATGGCATTGGCTGCCGGTTTTGTTCGCAAATAATACATCCCT 916886 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||||| ||| | ||||| || ||||| ||| |||| ||| ||| | || Sbjct 916887 GTTTTTAAACCCATTTTCCATGAATAGAAATGAATAGAAGTTAATTTTCCGTAGTTCGGT 916946 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 || || | ||| ||||| | || ||||||||||| || || ||||| | || |||||| Sbjct 916947 TCAGCAACGTGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCC 917006 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 71030 |||| ||| | || || || ||||||||||| || ||||| || || |||| | || Sbjct 917007 ATTTGTATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCCCTTATT-TC 917065 Query 71031 TTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGAT 71087 | || | || |||| || || |||||| || ||||| |||||| || Sbjct 917066 TGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCAT 917125 Query 71088 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTG 71147 || |||| |||||| | | || || ||| | | ||| | |||| |||| || ||||| Sbjct 917126 TTCCTCATCCCATAAATCTGCTTCTGTCAAATCACGAAGTAAATGATGATTTACAACTTG 917185 Query 71148 AAATTCTCCAGACAATAC---TCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204 |||||||||||| || || ||| || ||||||||| || | || || | || Sbjct 917186 AAATTCTCCAGATAAAACACGTCTTTGA---TAAATATTAGAAGTGAAGGGCTCAAAAGA 917242 Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264 ||||||||||| ||||| ||||| ||||| ||||| ||||| || || ||||| ||| Sbjct 917243 TTCATTATTTCCTAAAATCTGAGCTGTTGAGGCAGTGGGCATTGGGGCTACCAAAAGAGA 917302 Query 71265 ATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCC 71322 ||| | ||||||||| | || || || ||||||| || ||| | ||| | ||| Sbjct 917303 ATTACGAAGACCATGC--TTGGCAATGTTTTCTTTTAAAGCAGTCCAGTCCCATAAATCT 917360 Query 71323 GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCA 71382 | ||| ||||| ||| || ||||| | Sbjct 917361 GTTGGATTTTTATTCCACATTTCGTACTGTAATATGCCTCGACTTGCAGGGCATCCTTCG 917420 Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 ||||| || || ||| | ||||| |||||||||||||| ||||||| ||||||||| Sbjct 917421 TATGTTTCATACACTCCATACTTTTCTGCTAGTTCACAACTTGCCTCTAGTGCTCCATAG 917480 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCCGGGCTATCAAATGGATA 71501 ||||| ||||| || || | | ||| | || | | ||||| || || || | || | Sbjct 917481 TAAATAGTTTCAAATATTTGTTGATTTA-ATTTAATAGCTTCTGGACTTTCGTAAGGTAA 917539 Query 71502 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCT 71561 | | | |||||| || || || | |||||||| || || || |||||||| ||||| Sbjct 917540 ACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCTATGTCT 917599 Query 71562 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 71621 |||||| ||| ||||| |||| ||| |||||||| | ||| || |||||||| | Sbjct 917600 AAGATTAGATTTTTTTGCTTCCGGAACAGGGTAATAATTTACATCAATGATTTTATTCAA 917659 Query 71622 ATTT-CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC---AT 71677 |||| ||| ||| ||| || || |||| ||| ||| | | || | || Sbjct 917660 ATTTTCTGT-TATAGTTTTAGTAACTTCTTTTAATTTCTTAAAGTTATATGTTTTGTTAT 917718 Query 71678 CTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 71737 | ||||||| || | || | ||| || | || || || || || |||| | || Sbjct 917719 CATCAACAAACATATTTAGCGCTATAGAGGCTAAGTTGCATACTGCCACTTCATCATCAG 917778 Query 71738 CGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 71797 | ||||| | ||||||||||| || |||||||| || ||||| |||||||||| | Sbjct 917779 ATGTATATTCAACTATTTCAGTGCACAGGTTACTACATTTTATGGTACCTAAATTTTTCT 917838 Query 71798 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 ||||||| ||| | ||||| | ||| ||| | | || | ||||||||||| || | | Sbjct 917839 GATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACTT 917898 Query 71858 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTT 71917 ||| |||||| || |||||||| | ||| | ||| ||| | || |||| |||| Sbjct 917899 GAGCTTCTATTATTGCTTTCCAAAGAACTTGTGCCCTTACTTGTTTTACAAATCTATTTT 917958 Query 71918 CTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAG 71977 || |||| ||| | |||||| ||| || || | ||||||| | |||| || | Sbjct 917959 CTTTTTCATATGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAACCCTG 918018 Query 71978 GACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGA 72037 | || |||| |||||||| | | ||| | ||||||| | |||| |||||| || | Sbjct 918019 GGCAATCATGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGAAAA 918078 Query 72038 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 72097 ||||||| ||||| | || ||| || || |||| | || || ||||| || | Sbjct 918079 GATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCAGTGT 918138 Query 72098 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 72157 | || || | ||| | ||| | | ||||| | ||||||||||||||| || | || | Sbjct 918139 TTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCACGGTTCCAAATAGACTGCAA 918198 Query 72158 TAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217 | |||| || || || || ||||| ||||| | |||||||| || ||||| ||||||| Sbjct 918199 AAGCTCCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAACTC 918258 Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277 |||||||| | || |||||| ||| ||||||| || || | ||||| | || | | Sbjct 918259 GTAACATTGGTACAAGACCATTTGATACACCATTTGTTCCTGCTATATAAGTACCTTTAG 918318 Query 72278 CACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 | | || | || || | | ||| ||||| ||||| |||||| || || || || Sbjct 918319 CCCTTATACAGTGGACATGG--ACACCAATTCCACCTGCAGATTTAGATATCAAAGCACA 918376 Query 72336 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 72395 | ||||| ||||| || || || || || || ||||| |||| | ||||||||| Sbjct 918377 CTGCTTTAAGGTATCGTAAATTCCTTCAATGCTGTCATCTTTCATTGCCACTAGAAAACA 918436 Query 72396 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455 || | |||| | || |||| | || |||||||| || || || || || Sbjct 918437 TGATGATAGTTGGGGGCGTGGAGTTGCAGCTGAGAATAAGGTTGGGCTGGCATGAGTGAA 918496 Query 72456 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTAT 72515 |||| ||||| |||| ||||| || | || |||| || ||||| ||| || Sbjct 918497 ATATTTCTCAGAAAGTAAGTTGTATGTATTTATGGCTGCATCAATATCTTCACCATGAAT 918556 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 ||| | | || ||||| | |||||| ||||||| |||| Sbjct 918557 TCCAATTGACACTCGCATCAGCATATGTTGAGGTCGTTCA 918596 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 72770 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAAT 72829 ||||||||||||| || |||| ||||||| || | ||||| || |||| ||||||| Sbjct 919604 GTTTTTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCTGCAAGAACAGCATAAT 919663 Query 72830 CTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCG 72889 ||||||| | ||||| || || ||| | ||||| || ||| | |||| ||| || | Sbjct 919664 CTGGATGATCGGTAGTCATTGTAGCAGCTGTCTCTGCAGCAAGATTATCCAGTTCCACAG 919723 Query 72890 TTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 |||| ||||| || ||||| | |||||| || Sbjct 919724 TTGTCACTCCCGAGTAGATTCCATTGATAACTTT 919757 >seq483 Length=1310704 Score = 123 bits (136), Expect = 3e-23 Identities = 163/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || ||| | ||| || || || ||||| ||||| ||||| ||||||| Sbjct 173492 CCTCATCCCTGGAAATAAGTTCATTACTGAATGTAAGTCCCGGCATAAGGCCCCGCTTTT 173433 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || ||||| || || || |||||||||||||| || ||||||| Sbjct 173432 TGAGCCAGAAGATGGAAGCAAAACTGCCTGAGAAAAAGATTCCTTCTACAGCTGCAAAGG 173373 Query 42207 CAATAAGTCTCTCTCCATAACCGGCA--CTGTCATG-TATCCACTTTTGAGCCCAATCGG 42263 ||| || || || ||| | ||| || | || ||||||| | |||||||||| | Sbjct 173372 CAACAATCCTTTCACCAAATGTTGCAGTCTTGCTTGCAATCCACTGTAGAGCCCAATCTG 173313 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 | ||||| |||||||| || | || || | |||||||| ||| Sbjct 173312 CTTTCTTCTTTACACAGGGAAGAGTCTCAACCGCATTAAACAGA 173269 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||||||||| ||||||| ||||| ||||| ||||| || || ||||||||||| ||||| Sbjct 166351 ATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCCTC 166292 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 || || || |||||| |||||| ||| | || ||||| || || || || || Sbjct 166291 AGTGACTTGAACTTCTTGTGAAAATCTCTCAACCAAGTTTTCATTTACAATGCCATCTGA 166232 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509 || ||||| || || | ||||| || || |||| Sbjct 166231 AGCCGCAAAGAAAGCAAGGACATGCTTGATGAAAT 166197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670774578461880