Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq741 136 6e-27 seq761 116 5e-21 seq466 116 5e-21 >seq741 Length=16203812 Score = 136 bits (150), Expect = 6e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 70189 GACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCA 70248 || ||||||| |||| || || || | || || |||||||| || |||| | | | Sbjct 5508404 GAACAATCCAGCAGACAGAAGAATGTTGATATGTGCATGGAATTCTTCAGACCTTAAGAA 5508463 Query 70249 AATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTC 70308 |||||||||||||| ||||||||||| || || || || | ||||| ||||| || Sbjct 5508464 GATGGCACTACCACCATGTCACTGTTTAGCACAATTCTATGTGGCTGATGGGAAATTATC 5508523 Query 70309 ATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAG 70368 ||||| |||| || || ||||| ||||||||| | || || || ||||| || || || Sbjct 5508524 TTGCTTGTTGTACCAAAGAAGTGCTGACATGGGCTTAGGAGTTCCATTTAATATAGCTAG 5508583 Query 70369 CTATTCTATGTTGACGCACATGATTGCTCA 70398 ||||| || | || |||||||||||||| Sbjct 5508584 TTATTCGCTGCTCACACACATGATTGCTCA 5508613 >seq761 Length=5628829 Score = 116 bits (128), Expect = 5e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 126747 ACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGTT 126806 |||||||||||||||||| || |||| ||||| |||| ||||| || ||||| ||||| Sbjct 2176717 ACCGAGTCTGATGCCGCTGGGGTTGAGCGCGCTAATGTCGCCGGGCACGGTGTTCTTGTT 2176658 Query 126807 GCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACACT 126866 ||| || | ||||| || ||||| | |||||| ||||| || || || || || | Sbjct 2176657 GCAGGCCACGCTGCAGAGCTCGAGCACGCGCTCGGCCGGCGCGCCCCGCAGCCCGACGCC 2176598 Query 126867 GCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGT 126908 ||||| |||||| || || ||||| ||||| ||||| || Sbjct 2176597 GCGCAGATCCACGAGCGCGAGGTGCACGTCGGTGCCGCCCGT 2176556 >seq466 Length=1632705 Score = 116 bits (128), Expect = 5e-21 Identities = 315/476 (66%), Gaps = 6/476 (1%) Strand=Plus/Minus Query 97787 CTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGA 97846 |||||| |||| || || |||||||| || | || | || | || || ||| ||| Sbjct 917301 CTCTTT--TGGTAGCCCCAATGCCCACTGCCTCAACAGCTCAGATTTTAGGAAATAATGA 917244 Query 97847 ATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCA 97906 ||||||||| || ||||| || || || || || ||||| |||||||| ||||| Sbjct 917243 ATCTTTTGAGCCCTTCACTTCTAATATTTATCAAAGACGTGTTTTATCTGGAGAATTTCA 917184 Query 97907 A-TTGACCAACGTGCACTTGGTTCGAGACTTGGAACGGCTCA-ATCTGTGGAACGATGAC 97964 | ||| | | | || || |||| || ||| | | || || | ||| | || || Sbjct 917183 AGTTGTAAATCAT-CATTTACTTCGTGATTTGACA-GAAGCAGATTTATGGGATGAGGAA 917126 Query 97965 ATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAA 98024 ||| | | || || |||| ||||| || || ||||| || | || || | Sbjct 917125 ATGAAAAATCTCATTATACACAATAATGGATCTATACAAAATATCGAAAGTATACCTACA 917066 Query 98025 GAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATG 98084 || | | | || ||||| || ||||| ||| | ||| || || | ||| Sbjct 917065 GAAATAAGGGACTTATATAAGACAGTTTGGGAAATTTCAGTCAAAACAACAATACAAATG 917006 Query 98085 GCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAG 98144 ||||| || | || | | ||||| || |||||||| || ||| | ||||||| || Sbjct 917005 GCTGCTGATCGTGGAGCTTTTATTGATCAAAGTCAATCTTTTAATATACACGTTGCTGAA 916946 Query 98145 CCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACG 98204 || | |||| | | ||||| || || || || ||||||| | ||| | || || Sbjct 916945 CCGAACTACGGAAAATTAACTTCTATTCATTTCTATTCATGGAAAATGGGTTTAAAAACA 916886 Query 98205 GGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 || ||||| ||| || ||||||| |||| |||||||||||| |||||| ||||| Sbjct 916885 GGGATGTATTATTTGCGAACAAAACCGGCAGCCAATGCCATACAATTTACTGTGGA 916830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740656591799880