Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq472 201 9e-47 seq747 111 1e-19 seq762 105 6e-18 seq428 89.7 4e-13 seq8861 82.4 6e-11 >seq472 Length=1464009 Score = 201 bits (222), Expect = 9e-47 Identities = 578/882 (66%), Gaps = 23/882 (3%) Strand=Plus/Minus Query 100412 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAA---TTTTGCGCGGGTCC 100468 || || |||||||| || |||||||| ||||| || |||| | ||||| || || Sbjct 408214 ACTCCAGTCCAACCACGTCCGTACATAGCAACACCGACAACCAGCTTTTTGGGCTGG--- 408158 Query 100469 ACGCCCTGGTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTC 100528 || || ||| || || | | | || || ||| |||| || || || || Sbjct 408157 ACACCTTGGGTCAGCAGGTACCTGATACCGAAGTCGGTGGTGTAAGTTTCCTTAGGACTC 408098 Query 100529 CAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTA 100588 ||| || || || |||| || |||| |||| | | ||| |||||||| || || Sbjct 408097 CAAGATGGAGCATATAGAGCAGTCTGGTGTCCCAGAGTGTCGTTAGACCAGGCACCCTTG 408038 Query 100589 AAATCGTAGCTCATAAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACC 100648 || ||||| ||||||| || || | || | || || || | | ||| | || Sbjct 408037 AAGTCGTAACTCATAACGAAGATATGGTCCATGTATTTCTGGGCTTCCTTGTAGTTCACG 407978 Query 100649 ACAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTT 100708 || || ||||| | |||| ||||| || ||||||||||| ||| | || || Sbjct 407977 ACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGAGGTCAACTCGTAAGTTCTACCAGTC 407918 Query 100709 TGCAGTTGT-AGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTC 100767 | ||| | |||| |||| ||| || |||||||||| | | || |||| | Sbjct 407917 T-CAGCCGCCAGCTCATCCAACATTTGACGTAATTCCTTCATGA----GCTGAACGTATA 407863 Query 100768 GGCGTCGCGCTCCCCGT-TGCCAAGAGTCGGGTTGGCGCCTTTGCCGCCCGGAAACTCCC 100826 || || | | || ||| ||||| ||||||||||| || || ||||||| Sbjct 407862 CATCTCCGTCTTTAGGACTACCGAGATCAGGGTTAGCGCCTTTGCCACCTGGGAACTCCC 407803 Query 100827 AGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCA 100886 | |||||||| || || || || |||||||| || | || || || || ||| | | Sbjct 407802 AATCAATGTCGACACCATCGAAGAACTTCCAAGTTTGGAGGAAGTCTTTCACGGAGGCAA 407743 Query 100887 CAAA-----CACGCGCCGTTTTTCCGCATCGTGCATGAAATAGAACGGGTCGGACAACGT 100941 | || ||||| ||||| || ||| | ||| |||| || |||| ||| || Sbjct 407742 CGAAACGATCACGCTTGGTTTTGTCG----GTGAA-GAAGAAGAAGGGATCGGCCAATGT 407688 Query 100942 CCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAG 101001 |||||| || || || || | | || | | | ||| || | || | ||| || Sbjct 407687 CCAGCCACCAATTGAAGGTAAGACCTTTAAGCCAGTATTCGCTTGTTTCAACTGCATCAG 407628 Query 101002 CTGACCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTG 101061 ||| ||||| || || ||||| ||||||||||| | || | |||||||| ||||| || Sbjct 407627 CTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAATCCCTTTTGAGGTTTCTG 407568 Query 101062 TATTGCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCG 101121 | || |||||||||||||| || | || ||||| ||| ||| || |||| || || Sbjct 407567 CAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCACGGCCGCTGCATGAACG 407508 Query 101122 CTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCC 101181 || || |||| ||||||||| ||| ||| | ||| |||| ||| || || || Sbjct 407507 TTGTAGTGCTTGAAAACTGCCCTCAATTTCTTTCAAACTGTCATTGATGCCATCACCACC 407448 Query 101182 GCAAATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTAC 101241 ||||| || ||||| ||||| | || ||| | || || || | ||| || ||| || Sbjct 407447 ACAAATCGGAATGAAGCCGTAGAGCAAATGAGTCAGGTTCGGAACCGGAACGCGGTCCAC 407388 Query 101242 CGGAAAATTGCGGCCGTACACGCCCCACTCTACAAAATACGC 101283 || || || | ||||| ||||| || || || || || Sbjct 407387 AGGGAACTTTCTAGGATACACACCCCATTCGACGAAGTAAGC 407346 >seq747 Length=8313734 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || | ||| |||| || | ||||| || ||||||||||||||||| | Sbjct 5399492 TTCCACCTCTCAGACGTAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGG 5399551 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| |||| || || ||||| || || |||| |||| ||||||||| | Sbjct 5399552 ATAATGTCCGTCCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAG 5399611 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||||||||| |||||| |||||| | | | || ||| | ||| || Sbjct 5399612 GAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATGGTGTCG-GATGCTTCG 5399670 Query 18993 -TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || ||||||||||| || | |||||| |||||||| ||||| Sbjct 5399671 ACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTTTACAAAAATCTGCAT 5399720 >seq762 Length=5301712 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 25235 AAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTCCCA 25294 ||| || || || ||||||||| | |||||||| || || |||||||| | |||| Sbjct 754032 AAAGGGACACTGGGGCGCCCATCTCCGATGATCGGCGGCAGGATCGTCGCCTTCGACCCA 753973 Query 25295 GCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTAGTA 25354 | |||||| || || || || || || |||| ||| ||||||||||| || | |||||| Sbjct 753972 CCTCATAATTTCTACCTTACAGAAAGCACAGCACACCTCGTCGCCGCGACCGAGGTAGTA 753913 Query 25355 GAACCCATTGGCGGCCATTTGTCGCGGCGACATAAA 25390 ||| || ||| ||||| |||| ||||| || ||| Sbjct 753912 GAATCCGTTGCGGGCCAATTGTTCCGGCGTCAAAAA 753877 >seq428 Length=3255295 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640 || |||||||| ||||| | ||||| ||| ||| | | || |||| || |||||| Sbjct 2871850 GGGGGCGTGGGTTTGAACCTGTGCGGCGCCAACCACCTGTTCCTGCTGGACCCGCACTGG 2871909 Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAAAAGAAG 34697 ||||||||| |||| | ||||||||| |||||| || ||||| | |||||| | ||| Sbjct 2871910 AACCCGCAGCTCGAGCAGCAGGCGCAGGACCGCGTCTACCGCGTCGGCCAAGATAAG 2871966 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640 || |||||||| ||||| | ||||| ||| ||| | | || |||| || |||||| Sbjct 2870424 GGGGGCGTGGGTTTGAACCTGTGCGGCGCCAACCACCTGTTCCTGCTGGACCCGCACTGG 2870483 Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCA 34690 ||||||||| |||| | ||||||||| |||||| || ||||| | ||||| Sbjct 2870484 AACCCGCAGCTCGAGCAGCAGGCGCAGGACCGCGTCTACCGCGTCGGCCA 2870533 >seq8861 Length=554 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| || || |||| |||| ||||| || || || || ||||| || | Sbjct 14 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 73 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || || |||||||| |||||| |||| | || ||||||||| ||| Sbjct 74 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 133 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| ||| || ||| || | ||| || || | || | Sbjct 134 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACT 193 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || ||||||||||| || | ||||| |||||||| |||||| Sbjct 194 TCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATCTGCATT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414353198585422