Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq747 96.9 2e-15 >seq747 Length=8313734 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || || |||||||| | || || |||||||| ||||||||||| || Sbjct 5399494 CCACCTCTCAGACGTAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGGAT 5399553 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | || ||| || | ||| || ||| || || | || ||||| || | || Sbjct 5399554 AATGTCCGTCCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGA 5399613 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 ||||| ||||| || ||| |||||| ||| || |||||| | || || Sbjct 5399614 ATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATGGTGTCGGATGCTTCGACT 5399673 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || | ||||| ||||| || || ||||||||||| ||||| |||||| Sbjct 5399674 TCTAATGTTATGGTTTTACCAGTGAGAGTTTTTACAAAAATCTGCATG 5399721 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || ||||||||||||| || || ||||| || || ||||| ||||| Sbjct 5397898 CCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5397957 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | || || | || || || ||| || || || ||||| || | ||| Sbjct 5397958 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGA 5398017 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || |||| ||| || ||| || ||||| | || ||| Sbjct 5398018 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACT 5398077 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || ||||| || ||||| ||||| || || ||||||||| Sbjct 5398078 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCATG 5398125 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || ||||||||||||| || || ||||| || || ||||| ||||| Sbjct 5398354 CCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5398413 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | || || | || || || ||| || || || ||||| || | ||| Sbjct 5398414 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGA 5398473 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || |||| ||| || ||| || ||||| | || ||| Sbjct 5398474 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACT 5398533 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || ||||| || ||||| ||||| || || ||||||||| Sbjct 5398534 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCATG 5398581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318608741811774