Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq762 109 4e-19 seq747 96.9 2e-15 seq466 86.0 4e-12 >seq762 Length=5301712 Score = 109 bits (120), Expect = 4e-19 Identities = 146/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 10910 GTGAAGTTGAGCGTTTAAAAACATTTGTAGATTGGCCTGTTGTGTTTTTGTCGCCGCAAC 10969 |||||| || ||| | |||||||||| | ||||| ||| ||||||| ||||| ||| Sbjct 753833 GTGAAGAGGAACGTCTGAAAACATTTGATCAGTGGCCCGTTACGTTTTTGACGCCGGAAC 753892 Query 10970 TGTTAGCCAAAAATGGATTTTACTATTTGGGAAGAAGTGATGAGGTGAGATGTGCTTTTT 11029 || ||| || ||||| ||||| | || | | || |||||| | |||||||| | Sbjct 753893 AATTGGCCCGCAACGGATTCTACTACCTCGGTCGCGGCGACGAGGTGTGCTGTGCTTTCT 753952 Query 11030 GTAAAGTAGAAATTATGCGTTGGAAAGAAGACGACGATCCAGAAACAGAACATAGAAAAT 11089 |||| |||||||||||| | ||| |||| ||||||||| | | || ||| | | || Sbjct 753953 GTAAGGTAGAAATTATGAGGTGGGTCGAAGGCGACGATCCTGCCGCCGATCATCGGAGAT 754012 Query 11090 GGTCTCCTCAATGT-TCTTTGT 11110 || | || || ||| |||||| Sbjct 754013 GGGCGCCCCAGTGTCCCTTTGT 754034 >seq747 Length=8313734 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||| | ||| |||||||| || || |||||||||||||| |||||| | Sbjct 5399494 CCACCTCTCAGACGTAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGGAT 5399553 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| || | || || | |||||| || || || |||| || ||||| || |||| Sbjct 5399554 AATGTCCGTCCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGA 5399613 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||| ||| ||||||| ||| || | | | || || | | || || Sbjct 5399614 ATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATGGTGTCGGATGCTTCGACT 5399673 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || |||||||| || | ||| || ||||| || |||||| Sbjct 5399674 TCTAATGTTATGGTTTTACCAGTGAGAGTTTTTACAAAAATCTGCATG 5399721 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | || ||| || |||||||| || || ||||| || || || || || | Sbjct 5397214 CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5397273 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| | || || | ||||| |||||||| ||||| || ||||| ||| |||| Sbjct 5397274 AGTGTACGGCCGTCTTCAAGCTGTTTGCCTGCAAAGATCAATCGCTGCTGATCCGGAGGA 5397333 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || |||||||| ||| || ||| || | ||| || || | | || || Sbjct 5397334 ATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTTCAATGGTGTCAGATGCTTCAACT 5397393 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||||||||| | || |||||||| ||||||||| Sbjct 5397394 TCTAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATTTGCATG 5397441 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | || ||| || ||||| || || || ||||| || || || || ||| | Sbjct 5399038 CCACCACGCAGTCTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAT 5399097 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| |||| || | ||||| || ||||| |||||||| ||||| ||| |||| Sbjct 5399098 AGTGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAACCGCTGCTGATCCGGAGGA 5399157 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||| || ||| ||| ||| || | ||| || || | | || || Sbjct 5399158 ATTCCCTCTTTGTCCTGAATCTTTGCTTTCACATTCTCAATGGTGTCAGATGCTTCAACT 5399217 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||||||||| | || |||||||| || |||||| Sbjct 5399218 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATG 5399265 >seq466 Length=1632705 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| | ||| || |||| || || ||| ||||| || || ||||| || Sbjct 1583282 ACCTCCTCTAAGTCTCAAAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGA 1583341 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| || |||||||| || ||||| || | ||||| ||||| ||| Sbjct 1583342 AAGAGTGCGGC-CATCTTCTAATTGTTTCCCGGCAAAGATGAGACGTTGTTGGTCTGGAG 1583400 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||| || ||| ||||| |||||| | | | ||| || | | |||| Sbjct 1583401 GAATACCTTCCTTGTCTTGGATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCA 1583460 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | ||||| || || || || | || || || ||||||||||| Sbjct 1583461 CCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATTTGCAT 1583509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354589672420524