Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq472 262 3e-65 seq8861 95.1 1e-14 seq747 91.5 1e-13 >seq472 Length=1464009 Score = 262 bits (290), Expect = 3e-65 Identities = 595/884 (67%), Gaps = 27/884 (3%) Strand=Plus/Minus Query 101102 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAA---TTTTGCGCGGGTCT 101158 || || |||||||| || |||||||| ||||| || |||| | ||||| || || Sbjct 408214 ACTCCAGTCCAACCACGTCCGTACATAGCAACACCGACAACCAGCTTTTTGGGCTGG--- 408158 Query 101159 ACGCCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTTGGGTTC 101218 || || ||| || || | | | | || | || ||| |||| || || || || Sbjct 408157 ACACCTTGGGTCAGCAGGTACCTGATACCGAAGTCGGTGGTGTAAGTTTCCTTAGGACTC 408098 Query 101219 CAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGACCACGCGCCTTTG 101278 ||| || || || || | ||| || | |||||| | ||| ||||| || || ||| Sbjct 408097 CAAGATGGAGCATATAGAGCAGTCTGGTGTCCCAGAGTGTCGTTAGACCAGGCACCCTTG 408038 Query 101279 AAATCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGATCGTATTTTACT 101338 || ||||| ||||| | || || | || | | | || || || | ||| || || Sbjct 408037 AAGTCGTAACTCATAACGAAGATATGGTCCATGTATTTCTGGGCTTCCTTGTAGTTCACG 407978 Query 101339 ACAGCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTGCCCGTT 101398 || || ||||| ||| | || || ||| || || ||||| ||| | || || Sbjct 407977 ACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGAGGTCAACTCGTAAGTTCTACCAGTC 407918 Query 101399 TGCAGTTGCAA-CTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTTGTACGTGTC 101457 | ||| || | ||| |||| |||| || ||||| |||| | | || |||| | Sbjct 407917 T-CAGCCGCCAGCTCATCCAACATTTGACGTAATTCCTTCATGA----GCTGAACGTATA 407863 Query 101458 AGCGTCGCGTTCTTTGT---TGCCGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTC 101514 | || | ||||| | ||||| ||||| |||||||| ||||| || ||||| Sbjct 407862 --CATCTCCGTCTTTAGGACTACCGAGATCAGGGTTAGCGCCTTTGCCACCTGGGAACTC 407805 Query 101515 CCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATC 101574 |||||| ||||| || || || || || |||||| || | || ||||| || || | Sbjct 407804 CCAATCAATGTCGACACCATCGAAGAACTTCCAAGTTTGGAGGAAGTCTTTCACGGAGGC 407745 Query 101575 CAC-AAACA--CACGCC--GTTTTATCGCGTCGTGCATATAATAGAACGGGTCGGACAAT 101629 || |||| ||||| ||||| ||| ||| | | | |||| || |||| |||| Sbjct 407744 AACGAAACGATCACGCTTGGTTTTGTCG----GTGAAGAAGA-AGAAGGGATCGGCCAAT 407690 Query 101630 GTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATT 101689 |||||||| || || || || || | || | | | ||| || ||| | ||| Sbjct 407689 GTCCAGCCACCAATTGAAGGTAAGACCTTTAAGCCAGTATTCGCTTGTTTCAACTGCATC 407630 Query 101690 AGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTT 101749 ||||| || ||||| |||||||||||||||||||| | |||| || || || ||||| Sbjct 407629 AGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAATCCCTTTTGAGGTTTC 407570 Query 101750 TGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAA 101809 || | || ||||| ||||||||||||| ||| || || ||| |||||| ||| ||| Sbjct 407569 TGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCACGGCCGCTGCATGAA 407510 Query 101810 CGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCG 101869 ||||| | |||| |||||| || || ||| | ||| || | |||||| || Sbjct 407509 CGTTGTAGTGCTTGAAAACTGCCCTCAATTTCTTTCAAACTGTCATTGATGCCATCACCA 407450 Query 101870 CCACAAATGGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCC 101929 |||||||| || ||||| ||||| | |||||| | ||||| || | ||| || |||| Sbjct 407449 CCACAAATCGGAATGAAGCCGTAGAGCAAATGAGTCAGGTTCGGAACCGGAACGCGGTCC 407390 Query 101930 ACCGGAAAGTTGCGACCATACACGCCCCATTCTACAAAATACGC 101973 || || || || | | |||||| |||||||| || || || || Sbjct 407389 ACAGGGAACTTTCTAGGATACACACCCCATTCGACGAAGTAAGC 407346 >seq8861 Length=554 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA- 20052 ||||| |||||||| || ||||||||||| || |||||||| | | ||| | | || Sbjct 26 CTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGT--CAGATAATGTACGAC 83 Query 20053 -ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTT 20111 |||||| | |||||||||||| |||| | | ||| ||||| ||| | || |||| Sbjct 84 CATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCTT 143 Query 20112 TGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAA 20171 |||| ||| || |||||| | | | | || | ||| ||||| || | Sbjct 144 TGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTGA 203 Query 20172 TGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||||| ||||| | ||||| |||||||| |||||| Sbjct 204 TGGTTTTACCGGTAAGTGTTTTCACAAAAATCTGCATT 241 >seq747 Length=8313734 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA- 20052 ||||| |||||||| || ||||||||||| || |||||||| | | ||| | | || Sbjct 5398138 CTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGT--CAGATAATGTACGAC 5398195 Query 20053 -ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTT 20111 |||||| | |||||||||||| |||| | | ||| ||||| ||| | || |||| Sbjct 5398196 CATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCTT 5398255 Query 20112 TGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAA 20171 |||| ||| || |||||| | | | | || | ||| ||||| || | Sbjct 5398256 TGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTGA 5398315 Query 20172 TGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||||| ||||| | ||||| ||||| || |||||| Sbjct 5398316 TGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398353 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA- 20052 ||||| |||||||| || ||||||||||| || |||||||| | | ||| | | || Sbjct 5398594 CTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGT--CAGATAATGTACGAC 5398651 Query 20053 -ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTT 20111 |||||| | |||||||||||| |||| | | ||| ||||| ||| | || |||| Sbjct 5398652 CATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCTT 5398711 Query 20112 TGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAA 20171 |||| ||| || |||||| | | | | || | ||| ||||| || | Sbjct 5398712 TGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTGA 5398771 Query 20172 TGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||||| ||||| | ||||| ||||| || |||||| Sbjct 5398772 TGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398809 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAG-- 20051 ||||| ||||| || || ||||||||||| || |||||||| ||| ||||| | | Sbjct 5399050 CTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCG--GATAGTGTACGGC 5399107 Query 20052 AATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTT 20111 |||||| | |||||||||||| | || | || ||| ||||| || | || |||| Sbjct 5399108 CATCTTCAAGCTGTTTGCCCGCAAAGATCAACCGCTGCTGATCCGGAGGAATTCCCTCTT 5399167 Query 20112 TGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAA 20171 |||| ||| ||| |||||| | ||| | || | ||| ||| | || | Sbjct 5399168 TGTCCTGAATCTTTGCTTTCACATTCTCAATGGTGTCAGATGCTTCAACTTCTAGTGTGA 5399227 Query 20172 TGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||| ||||| | ||||| ||||| || ||||| Sbjct 5399228 TGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5399264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA- 20052 ||||| |||||||| || ||||||||||| || |||||||| | | ||| | | || Sbjct 5397682 CTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGT--CAGATAATGTACGAC 5397739 Query 20053 -ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTT 20111 |||||| | |||||||| ||| |||| | | ||| ||||| ||| | || |||| Sbjct 5397740 CATCTTCAAGCTGTTTGCCAGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCTT 5397799 Query 20112 TGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAA 20171 |||| ||| || |||||| | | | | || | ||| ||||| || | Sbjct 5397800 TGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTGA 5397859 Query 20172 TGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||||| ||||| | ||||| ||||| || |||||| Sbjct 5397860 TGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5397897 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAG-- 20051 ||||| |||||||||| ||||||||||| || |||||||| | | ||||| | | Sbjct 5396998 CTCAAAACCAAATGTAAAGTAGATTCTTTCTGGATGTTGTAGT--CAGATAGTGTACGGC 5397055 Query 20052 AATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTT 20111 |||||| | |||||||||||| | || | | ||| ||||| || | || |||| Sbjct 5397056 CATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCCGGAGGAATTCCCTCTT 5397115 Query 20112 TGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAA 20171 |||| ||| || |||||| | | | | || | ||| ||||| || | Sbjct 5397116 TGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTGA 5397175 Query 20172 TGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||| ||||| | ||||||||||| || ||||| Sbjct 5397176 TGGTTTTACCGGTAAGTGTTTTGACAAAGATCTGCAT 5397212 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--AT 20054 ||||||||||| || ||||||||||| || |||||||| | | ||| | | || || Sbjct 5397457 AACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGT--CAGATAATGTACGACCAT 5397514 Query 20055 CTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGT 20114 |||| | |||||||||||| | || | | ||| ||||| ||| | || ||||||| Sbjct 5397515 CTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGT 5397574 Query 20115 CGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGG 20174 | ||| || |||||| | | | | || | ||| ||| | || |||| Sbjct 5397575 CCTGAATCTTGGCTTTCACATTCTCTATGGTGTCAGATGCTTCAACTTCTAGTGTGATGG 5397634 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| | ||||| ||||| |||||||| Sbjct 5397635 TTTTACCGGTAAGTGTTTTCACAAAGATTTGCAT 5397668 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--AT 20054 ||||||||||| || ||||||||||| || |||||||| | | ||| | | || || Sbjct 5397913 AACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGT--CAGATAATGTACGACCAT 5397970 Query 20055 CTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGT 20114 |||| | |||||||||||| | || | | ||| ||||| ||| | || ||||||| Sbjct 5397971 CTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGT 5398030 Query 20115 CGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGG 20174 | ||| || |||||| | | | | || | ||| ||| | || |||| Sbjct 5398031 CCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACTTCTAGTGTGATGG 5398090 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| | ||||| ||||| |||||||| Sbjct 5398091 TTTTACCGGTAAGTGTTTTCACAAAGATTTGCAT 5398124 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--AT 20054 ||||||||||| || ||||||||||| || |||||||| | | ||| | | || || Sbjct 5398369 AACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGT--CAGATAATGTACGACCAT 5398426 Query 20055 CTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGT 20114 |||| | |||||||||||| | || | | ||| ||||| ||| | || ||||||| Sbjct 5398427 CTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGT 5398486 Query 20115 CGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGG 20174 | ||| || |||||| | | | | || | ||| ||| | || |||| Sbjct 5398487 CCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACTTCTAGTGTGATGG 5398546 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| | ||||| ||||| |||||||| Sbjct 5398547 TTTTACCGGTAAGTGTTTTCACAAAGATTTGCAT 5398580 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAG--AAT 20054 || |||||||| || |||||||||||||| || ||||||||| ||| | | | | Sbjct 5399509 AATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCG--GATAATGTCCGTCCGT 5399566 Query 20055 CTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGT 20114 |||| | |||||| || || |||| || | ||| ||||| || | ||| ||||||| Sbjct 5399567 CTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGT 5399626 Query 20115 CGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGG 20174 | ||||||| ||| || | | | | ||| | ||| ||| | || |||| Sbjct 5399627 CTTGAATTTTTGCTTTTACATTTTCTATGGTGTCGGATGCTTCGACTTCTAATGTTATGG 5399686 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || || | ||||| |||||||| ||||| Sbjct 5399687 TTTTACCAGTGAGAGTTTTTACAAAAATCTGCAT 5399720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419364942431103