Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq747 104 2e-17 >seq747 Length=8313734 Score = 104 bits (114), Expect = 2e-17 Identities = 170/239 (71%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTC 48573 ||| || ||||| || || || |||||||| |||||||| | ||| || |||| Sbjct 5399508 TAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGGATAATGTCCGTCCGTC 5399567 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 || || || || || || |||| | ||||||||||| || | | || ||||| Sbjct 5399568 TTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTC 5399627 Query 48634 CATAATTTTCTGCTTG-ATAGACGCTATGGTATCGGTAGACTCCGTCT-CGACTGTTATG 48691 |||||| ||||| | | ||||||| |||| | || || || | | ||||||| Sbjct 5399628 TTGAATTTT-TGCTTTTACATTTTCTATGGTGTCGGATG-CTTCGACTTCTAATGTTATG 5399685 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG---TCTTGATCGAAGAAAGA 48747 |||||||| ||||||||||| |||||||||||||| ||| ||| || | ||||| || Sbjct 5399686 GTTTTACCAGTGAGAGTTTTTACAAAAATCTGCATGGTGGTTTCTAGAACAAAGAAGGA 5399744 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| |||||| || |||||||||||||| || | ||| || |||| |||||||| Sbjct 4903419 ATGGAGTGTGGATTCTTTTTGAATGTTGTAGTCTGACAAGGTGCGTCCGTCTTCCAGCTG 4903360 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | |||||| ||||| || | | ||| ||||| || || Sbjct 4903359 CTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATCTT 4903300 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || || || | || |||| || | || ||||| || ||||| Sbjct 4903299 CGCCTTCACATTCTCAATTGTGTCCGAAGGCTCCACTTCTAAAGTGATGGTCTTGCCGGT 4903240 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||||||| |||||||| Sbjct 4903239 TAGAGTTTTCACAAAGATCTGCAT 4903216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421028061001463