Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq741 89.7 6e-13 seq753 82.4 9e-11 >seq741 Length=16203812 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 7127 TTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTC 7186 |||| | ||| ||||||||||| || ||||| ||| ||||||| ||||| || || | Sbjct 5507502 TTTGCAGTTGGTCTATACCCTGTCCAGTATAATCAGTCTGACAATCAATATATTTTGCAC 5507443 Query 7187 CAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCT 7230 || ||||||||||||||| ||||| | ||| |||| ||| ||| Sbjct 5507442 CACTATGTCTCCATTGAAATCCATATACAGGGCCTAGATCTCCT 5507399 >seq753 Length=6731059 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 19362 AAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATC 19421 |||| || |||||||||||||| || ||||||||| |||||||| || || Sbjct 3957471 AAATTGGAGATAAGTTTGCTTCACGACATGGTCAAAAAGGAACATGTGGAATTCAATACA 3957412 Query 19422 GTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCAC 19481 | |||||||||||||| |||||| || |||||| || ||| | |||||||| || | Sbjct 3957411 GGCAAGAAGATATGCCATTTACTTGCGAAGGTATAACACCAGATATCATTATTAATCCTC 3957352 Query 19482 ATGCT 19486 | ||| Sbjct 3957351 ACGCT 3957347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595548270190800