Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1292 125 4e-24 seq767 125 4e-24 seq41377 123 1e-23 seq39161 118 6e-22 seq745 118 6e-22 seq460 118 6e-22 seq768 114 7e-21 seq742 111 8e-20 seq748 107 1e-18 seq426 107 1e-18 >seq1292 Length=10107 Score = 125 bits (138), Expect = 4e-24 Identities = 88/101 (87%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||||| || | |||||| | |||||||||||| |||||||||| |||||||||| Sbjct 350 AATATAAAAATGCGAAAAAAGAAGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 409 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| ||||||||||||||||||||| Sbjct 410 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 450 >seq767 Length=4962828 Score = 125 bits (138), Expect = 4e-24 Identities = 85/96 (89%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 || || || | |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 2062070 AAGAAACAGAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 2062129 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACGATTG 11540 |||| ||||||||||||||||||||| |||||||| Sbjct 2062130 CTCTAACCAACTGAGCTAATGGGCCGCTGACGATTG 2062165 Score = 123 bits (136), Expect = 1e-23 Identities = 89/101 (88%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11432 TATAGAATTAATA-AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||| |||| | | |||||| ||| |||||||||| |||||||||| |||||||||| Sbjct 2049523 TATAAAATTTACATAAAAATAAAACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 2049464 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| ||||||||||||||||||||| Sbjct 2049463 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 2049423 >seq41377 Length=1115 Score = 123 bits (136), Expect = 1e-23 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 129 AAAAAAGAAGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 70 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 69 GCTCTAACCAACTGAGCTAATGGGCCG 43 >seq39161 Length=901 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 40 AAAACGAAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 99 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 100 CTCTAACCAACTGAGCTAATGGGCCG 125 >seq745 Length=8683647 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 2072608 AAAACGAAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 2072549 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 2072548 CTCTAACCAACTGAGCTAATGGGCCG 2072523 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2098978 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2098919 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2098918 TGAGCTAATGGGCC 2098905 Score = 109 bits (120), Expect = 3e-19 Identities = 82/95 (86%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 11436 GAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| | ||||||| | || |||| ||||| |||||||||| ||||||||||||||| Sbjct 1685633 GAATGATTAAAAAA--AGATGTGGCTCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 1685690 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||| ||| Sbjct 1685691 TAGCACGACGCTCTAACCAACTGAGCTAATGAGCC 1685725 >seq460 Length=1734898 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 887268 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 887327 Query 11516 TGAGCTAATGGGCCGTCGACGATT 11539 ||||||||||||||| || | ||| Sbjct 887328 TGAGCTAATGGGCCGACGTCTATT 887351 >seq768 Length=4702674 Score = 114 bits (126), Expect = 7e-21 Identities = 85/98 (87%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||||| ||||||| | ||| |||||||||| |||||||||| |||||||||||| Sbjct 986582 TAGAA--AATAAAACAAAAAAACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 986639 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 986640 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 986677 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 988883 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 988942 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 988943 TGAGCTAATGGGCC 988956 >seq742 Length=11281751 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1444461 TGGCCCATGTGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1444520 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 1444521 TGAGCTAATGGGCCG 1444535 >seq748 Length=8002931 Score = 107 bits (118), Expect = 1e-18 Identities = 86/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||||| || || ||| | || ||||||||||| || ||||||| |||||||| Sbjct 2522154 AAATATATTATAAAAAAATACACATCATTGGCCCATGTGAGCATCGAACTCACGACCTTC 2522095 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 2522094 GCGTTATTAGCACGATGCTCTAACCAACTGAGCTAATGGGCCG 2522052 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1372855 TGGCCCATGTGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1372796 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 1372795 TGAGCTAATAGGCCG 1372781 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1373938 TGGCCCATGTGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1373879 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 1373878 TGAGCTAATAGGCCG 1373864 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || |||||| |||||||||| ||| |||||| |||||||||||||||||||||| Sbjct 430317 ATTAAAAATGTTGTTGGCCCATGTGAGGTTCGAACTCACGACCTTCGCGTTATTAGCACG 430376 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||| |||||||||| |||| Sbjct 430377 ACGCTCTAACCCCCTGAGCTAATAGGCC 430404 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| ||| || ||||||| |||| |||||||||||||||||||||||| ||| Sbjct 1343209 ATTGGCCTATGTGGGGTTCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCC 1343150 Query 11514 ACTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 1343149 CCTGAGCTAATAGGCCG 1343133 >seq426 Length=3277875 Score = 107 bits (118), Expect = 1e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 |||| || |||||||||| |||||||||| ||||||||||||||||||| |||||| Sbjct 2033073 AAATAAACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCCTGACGCT 2033014 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || |||||||||||||||||||| Sbjct 2033013 CTAACCAACTGAGCTAATGGGCC 2032991 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261352686722188