Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_007029.1 Length=6307 Score E Sequences producing significant alignments: (Bits) Value seq752 136 2e-28 >seq752 Length=6701349 Score = 136 bits (150), Expect = 2e-28 Identities = 279/413 (68%), Gaps = 13/413 (3%) Strand=Plus/Minus Query 1503 ATATTTAAATCTAAACTCTTGCATTTTATTACGAATACTGTTCTGAATAGATTGAGTGTC 1562 |||||| ||| | ||||||||||| ||||||||||||||| || || | || Sbjct 4685288 ATATTTGCCTCTCATTTCTTGCATTTTGTTACGAATACTGTTCACAACCAGCTGCCTATC 4685229 Query 1563 TAATGTAATCCAACCTTTCTCACGGCCGTACTCTTC--AACATATGTGAGCAACACTGTT 1620 || | |||| ||| ||| |||| | ||| |||||| | | || || ||| Sbjct 4685228 AAAATCAGCCCAATTTTTTTCA--GCCGCATATTTCTTAACATAGTTCAATAAAACAGTT 4685171 Query 1621 CTTGCAGTTTCATCTAATCCTGGTCTGATAGTTGCTCCTTCGACATCGTAAGCTCKAGCT 1680 |||||| |||||||| || || || || || |||||||| | || ||| Sbjct 4685170 CTTGCATGTTCATCTAGACCGGGCCTTAT---TGGTCCTTCGA------ATGCATTGGCT 4685120 Query 1681 CTTGACCCGGTTAATGAACAGATGGTCAATGCACTCTTAGTGAAAATTTCGACCAATAAC 1740 || || |||| ||||| | | | | |||| |||| || |||||||| | || ||| Sbjct 4685119 TTTTTTCCAGTTAGAGAACAAACGCTTAGTGCATTCTTGGTAAAAATTTCTAGTAACAAC 4685060 Query 1741 AATCGAGCCAATGATTTGCAATCTTTTGACAATCTCTTGCAATTACTAAGCTTTATGGCA 1800 | ||| || | | ||||| ||| |||| | | || ||||| || || | ||||| Sbjct 4685059 ATTCGTGCAAGGGTTTTGCTGCCTTGCGACATTATGTTACAATTGCTTAGTTGAATGGCG 4685000 Query 1801 TTGATGTAGACATTGGTATGGGGCATGAGTTCTACAAGTCCCGGAGCCATTTGACGATGC 1860 | ||||| || | | || || | |||||| |||||||| | ||| |||||| Sbjct 4684999 TCTATGTACACTTGTGACTGTGGTAGGAGTTCAACAAGTCCACTTTTCTTTTCCCGATGC 4684940 Query 1861 TTTAAGGTCCATCTTGAGTCATTTTCATCGTATTCTGGAGGTAAAACAAATTT 1913 |||| |||||||||||||||||| ||| || ||||| |||||| ||| || Sbjct 4684939 TTTAGGGTCCATCTTGAGTCATTCGGATCATACTCTGGTGGTAAAGTAAACTT 4684887 Lambda K H 0.635 0.408 0.914 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20057387966972