Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq472 237 1e-57 seq747 131 2e-25 seq5054 93.3 4e-14 >seq472 Length=1464009 Score = 237 bits (262), Expect = 1e-57 Identities = 493/722 (68%), Gaps = 29/722 (4%) Strand=Plus/Plus Query 23642 CGCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTGCCCGT 23701 ||| ||||| ||||| ||||| || ||||| ||| | || || || ||| || || || Sbjct 407345 CGCTTACTTCGTCGAATGGGGTGTGTATCCTAGAAAGTTCCCTGTGGACCGCGTTCCGGT 407404 Query 23702 GCCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGAATTAA 23761 || || || | |||||||||||||||||| | || || || || || || || || || Sbjct 407405 TCCGAACCTGACTCATTTGCTCTACGGCTTCATTCCGATTTGTGGTGGTGATGGCATCAA 407464 Query 23762 CGACGCTCTCAAAACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGCGCGGGCCG 23821 ||| | | ||| | ||||||||| | || || || ||||| ||| ||||| Sbjct 407465 TGACAGTTTGAAAGAAATTGAGGGCAGTTTTCAAGCACTACAACGTTCATGCAGCGGCCG 407524 Query 23822 CGCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCGCAGAAGGG 23881 | ||||||||||| || ||||||||||| ||||| || || ||||| || || ||||| Sbjct 407525 TGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAACCTCAAAAGGG 407584 Query 23882 AGTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCAACGAAACT 23941 | | ||| | ||||||||||| || || ||||| || ||| ||||| ||||| Sbjct 407585 ATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACA 407644 Query 23942 GGCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCTGATCCGT- 24000 ||| || | ||| || || ||||||| || ||||||||||| || | ||||| | Sbjct 407645 AGCGAATACTGGCTTAAAGGTCTTACCTTCAATTGGTGGCTGGACATTGGCCGATCCCTT 407704 Query 24001 ----TTTATCACATGCACGAGCCCAGCGTACGCCGTGTGTTTATCGACTCTGTCGAAGAG 24056 || |||| || | || ||||| ||| || | | ||| || |||| Sbjct 407705 CTTCTTCTTCACCGACA-AAACCAAGCGT-GATCGT---TTCGTTGCCTCCGTGAAAGAC 407759 Query 24057 TTTTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCCCCGGCGGC 24116 || | ||| ||||| ||||| || || ||||||||||||||||||||||| || ||| Sbjct 407760 TTCCTCCAAACTTGGAAGTTCTTCGATGGTGTCGACATTGATTGGGAGTTCCCAGGTGGC 407819 Query 24117 AAAGGGGCAAATCCCAACGTTGGCGATGCCGAACGTGATCGCGCCACGTACACCGCC--C 24174 ||||| || || || | | || | || || | || | | ||| || | | Sbjct 407820 AAAGGCGCTAACCCTGATCTCGG-TAGTCCTAAAG---ACG-GAGATGTATACGTTCAGC 407874 Query 24175 TATTGTCAGAGTTGCGCGTCAGA--TTGGACGCGTTGGGCGTGCGCACAAACCGCTA--- 24229 | || || || ||||| | ||||| | | | |||| || | || | || Sbjct 407875 TCATGAAGGAATT--ACGTCAAATGTTGGATGAGCT-GGCG---GCTGAGACTGGTAGAA 407928 Query 24230 -TTACGCGCTCACCTCTGCCATAAGCGCGGGCAACGACAAGATAGCTGTCGTCAACTACA 24288 ||||| | | ||||||||||| ||||| || |||||||| ||||| ||||||| Sbjct 407929 CTTACGAGTTGACCTCTGCCATCAGCGCCGGTTGGGACAAGATCCAAGTCGTGAACTACA 407988 Query 24289 CCGAAGCGCAAAAATATTTGGATACTATATTCTTGATGACGTACGACTTCAAAGGAGCCT 24348 ||||| || ||||| |||| ||| ||| | |||| ||||||||||| || |||| Sbjct 407989 AGGAAGCCCAGAAATACATGGACCATATCTTCGTTATGAGTTACGACTTCAAGGGTGCCT 408048 Query 24349 GG 24350 || Sbjct 408049 GG 408050 >seq747 Length=8313734 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | |||||| || | ||| | || || || |||||||||||||| || Sbjct 4903443 GCCTCCACGAAGACGCAGTACAAGATGGAGTGTGGATTCTTTTTGAATGTTGTAGTCTGA 4903384 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || ||||||||||| || |||| | |||||| || || ||||| Sbjct 4903383 CAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGG 4903324 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| ||| | | ||| | || || | | ||| | Sbjct 4903323 AATTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCCGAAGGCTCCAC 4903264 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | ||| || |||||||||||||| || || ||||||||| || Sbjct 4903263 TTCTAAAGTGATGGTCTTGCCGGTTAGAGTTTTCACAAAGATCTGCATGCCT 4903212 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| | ||||||||| | || || ||||||||||| ||||| || | Sbjct 4903670 CCTCCTCGTAGACGTAACACTAAATGGAGTGTAGATTCCTTTTGAATATTGTAGTCTGAC 4903611 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || ||||||||||| || |||| | |||||| || || ||||| Sbjct 4903610 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 4903551 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| ||| ||| | | ||| | || || | | || | Sbjct 4903550 ATTCCTTCTTTGTCTTGGATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCTACT 4903491 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | ||| || ||||| |||||||| ||||| ||||||||| || Sbjct 4903490 TCCAAAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAGATCTGCATGCCT 4903440 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| | || ||||| | || || || |||||||| ||||||||| Sbjct 5399494 CCACCTCTCAGACGTAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGGAT 5399553 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || || || || || ||| | || | |||||||| || ||||| Sbjct 5399554 AATGTCCGTCCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGA 5399613 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| ||| ||| ||||| | | || | || |||| | |||| Sbjct 5399614 ATGCCCTCTTTGTCT-TGAATTTTTGCTTTTACATTTTCTATGGTGTCGGATGCTTCGAC 5399672 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||||||||| || ||||||||||| |||||||||||| Sbjct 5399673 TTCTAATGTTATGGTTTTACCAGTGAGAGTTTTTACAAAAATCTGCATG 5399721 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| | || || || || | || || || || || |||||||| ||| Sbjct 5399037 GCCACCACGCAGTCTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCGGA 5399096 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || || || ||||| ||||| || |||| || |||||||| |||||||| Sbjct 5399097 TAGTGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAACCGCTGCTGATCCGGAGG 5399156 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||||| |||||||| ||| | | ||||| | | ||| | || || | | || | Sbjct 5399157 AATTCCCTCTTTGTCC-TGAATCTTTGCTTTCACATTCTCAATGGTGTCAGATGCTTCAA 5399215 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||||||||| || ||||| || || ||||||||| Sbjct 5399216 CTTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATG 5399265 >seq5054 Length=501 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || ||||| || | ||| || || || ||||| ||||| || Sbjct 434 CCTCCTCGAAGACGTAGTACTAAGTGCAGGGTAGATTCTTTCTGAATATTGTAGTCTGAT 375 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | |||||||| ||| |||| | | ||| ||||| ||||| Sbjct 374 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGAGGA 315 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||||| || | || | ||||| | | || | Sbjct 314 ATGCCTTCCTTGTCCTGGATTTT-TGCTTTGACATTTTCAATTGTATCTGAAGCTTCAAC 256 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || |||||||||||||| || |||||||| Sbjct 255 CTCAAGGGTGATTGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471756361345920