Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq472 311 8e-80 seq747 152 4e-32 seq466 140 3e-28 seq5054 118 9e-22 >seq472 Length=1464009 Score = 311 bits (344), Expect = 8e-80 Identities = 659/969 (68%), Gaps = 17/969 (2%) Strand=Plus/Minus Query 57199 TAATCAACCACGCCTTCCTCCCACGTGCCGTGCACAGGCCCACTTCCTTTACCCGTGAAC 57258 || || ||||| || |||| ||| || || | || || ||| | | || ||||| Sbjct 408298 TAGTCCACCACACCGTCCTGCCAAGTTCCTTTAACTGGACCATTAGCAACTCCAGTGAAG 408239 Query 57259 GGATTGTTGTCCGTGTAGTCGTGCACACCCGTCCATCCTCGACCGTACATGGCCACGCCA 57318 || ||| ||| |||||||||| || || ||||| || || |||||||| || || || Sbjct 408238 GGTATGTCGTCGTTGTAGTCGTGAACTCCAGTCCAACCACGTCCGTACATAGCAACACCG 408179 Query 57319 ACCACTAT-TTTGTCAGC-GGACACGTTCTGCGCTAACAAAGTGCGT-ACAGCATTGTCT 57375 || || | ||| | || |||||| || | | | | || | | | | | ||| Sbjct 408178 ACAACCAGCTTTTTGGGCTGGACACCTTGGG---TCAGCAGGTACCTGATACCGAAGTCG 408122 Query 57376 GTGGTATATGGTTCGCTAGGGTTCCACAGA-GGCGCATAAATGTTGGTTTGATAGCCCAA 57434 ||||| || | ||| |||| |||| ||| || ||||| | || || | |||| Sbjct 408121 GTGGTGTAAGTTTCCTTAGGACTCCA-AGATGGAGCATATAGAGCAGTCTGGTGTCCCAG 408063 Query 57435 ATTTGTGTTACTCCAGGCACCTTTAAAATCGTACGACATTAAGAATATGCTGTCGAGATA 57494 | | |||| ||||||||| || || ||||| ||| | ||| || ||| | || Sbjct 408062 AGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATAACGAAGATATGGTCCATGTA 408003 Query 57495 TTTTTGCGCATGATTGTAATCGACAAGTTCGATTTTATCATTACCGGCGCCGATGGCTGT 57554 ||| || || | ||||| | || | || ||| || || |||||||| |||||| | Sbjct 408002 TTTCTGGGCTTCCTTGTAGTTCACGACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGA 407943 Query 57555 TGTGAGCAA-TAGTTTACGATCAGTTTCCAGTTCCAACTCGTCCAACATTAATCTCAAAT 57613 || | | || || | | |||| || ||| ||| ||||||||| | || | Sbjct 407942 GGTCAACTCGTAAGTT-CTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATT 407884 Query 57614 CTTTCAATAGCCGCACGTATGTTTCTCCGTCGCGACCAGGGTCGCCCAACAA-AGGATTA 57672 | |||| ||| | |||||| |||||||| | || | || | | ||| ||| Sbjct 407883 CCTTCATGAGCTGAACGTATACATCTCCGTCTTTA----GGACTACCGAGATCAGGGTTA 407828 Query 57673 GCACCATTACCACCAGGAAATTCCCAATCAATGTCGACTCCATCAAAAAATTTCCACACT 57732 || || || ||||| || || ||||||||||||||||| ||||| || || ||||| | Sbjct 407827 GCGCCTTTGCCACCTGGGAACTCCCAATCAATGTCGACACCATCGAAGAACTTCCAAGTT 407768 Query 57733 TTGATGTAGTCGCGCACCGATTGCACAAAAGTGTTGCGAATAGTGTCGTCGTGCATGAAA 57792 | || | |||| ||| || || ||| | || | || | |||| | ||| Sbjct 407767 TGGAGGAAGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTGTCGGTGAAGAAG 407708 Query 57793 AAGAAGGGATCCGATAAGGTCCAACCACCAATGGATGGCAATACTTTTAGATGCGGATAT 57852 ||||||||||| | || ||||| |||||||| || || || || |||| | || Sbjct 407707 AAGAAGGGATCGGCCAATGTCCAGCCACCAATTGAAGGTAAGACCTTTAAGCCAGTATTC 407648 Query 57853 GCTTTTTTGACCGCCATCAGTTGACCAAAATTACCTTTGTAAGGTTCGTTCCAAGCCGAT 57912 |||| ||| | | |||||| || || || ||||||||||| || |||||||| | |||| Sbjct 407647 GCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGAT 407588 Query 57913 ACTCCTTGTTGAGGCTTTTGTAGCGCCGCCCAAGGATCGTGTATCGTTACTTTGAAATCT 57972 | ||| | |||||| || || || |||||||| |||||||| || | || ||||| ||| Sbjct 407587 AATCCCTTTTGAGGTTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCT 407528 Query 57973 TCTCGGCCTGCACACGAACGTTGCAACGCTTCAAAACTACCTGTAATCGTCTTT-AGACT 58031 || ||||| || |||||||| | |||| |||||| || ||| ||||| | ||| Sbjct 407527 TCACGGCCGCTGCATGAACGTTGTAGTGCTTGAAAACTGCCCTCAATT-TCTTTCAAACT 407469 Query 58032 GTCGTTGATGCCATCGCCTCCGCAAATAGGCACGAAACCGTACAACAAATGAGTCAAATT 58091 ||| ||||||||||| || || ||||| || | ||| ||||| | ||||||||||| || Sbjct 407468 GTCATTGATGCCATCACCACCACAAATCGGAATGAAGCCGTAGAGCAAATGAGTCAGGTT 407409 Query 58092 GGGTACGGGTACTTTATCAACTGGATATTTACGACCGTACACACTCCACTCCACGAAATA 58151 || || || || || || || | || | | ||||||| ||| || ||||| || Sbjct 407408 CGGAACCGGAACGCGGTCCACAGGGAACTTTCTAGGATACACACCCCATTCGACGAAGTA 407349 Query 58152 AGCTCCCAC 58160 ||| ||||| Sbjct 407348 AGCGCCCAC 407340 >seq747 Length=8313734 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| ||||||| || ||||||| | ||||| || | || Sbjct 4903444 ATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCG 4903503 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||||||||| ||||| ||||| ||| Sbjct 4903504 GACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAA 4903563 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | ||||| | ||||| || || |||||| Sbjct 4903564 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAAT 4903623 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| ||||| || || ||||||||| || | ||| ||||||||| Sbjct 4903624 ATTCAAAAGGAATCTACACTCCATTTAGTGTTACGTCTACGAGGAGGAA 4903672 Score = 141 bits (156), Expect = 8e-29 Identities = 174/235 (74%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || |||||||| ||| | || |||||| |||| ||| | ||||| || | Sbjct 5399723 ACCATGCAGATTTTTGTAAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCA 5399664 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || ||||| || || | || ||||||||| ||| |||||||| || ||||| || Sbjct 5399663 TCCGACACCATAGAA--AATGTAAAAGCAAAAATTCAA-GACAAAGAGGGCATTCCTCCA 5399607 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | ||||| || || |||||| | ||||| | || || | |||| Sbjct 5399606 GATCAGCAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGGACATTATCCGAT 5399547 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||||||||||| || || ||||| || || | || ||||| |||| Sbjct 5399546 TACAATATTCAAAAAGAATCTACTCTCCATTTGGTATTACGTCTGAGAGGTGGAA 5399492 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | ||||| || ||||||| | ||||||||| | || Sbjct 4903216 ATGCAGATCTTTGTGAAAACTCTAACCGGCAAGACCATCACTTTAGAAGTGGAGCCTTCG 4903275 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||||||||| ||||| ||||| ||| Sbjct 4903276 GACACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAA 4903335 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | ||||| | ||||| || || ||||| Sbjct 4903336 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAAC 4903395 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||||||| || ||| | || || Sbjct 4903396 ATTCAAAAAGAATCCACACTCCATCTTGTACT 4903427 >seq466 Length=1632705 Score = 140 bits (154), Expect = 3e-28 Identities = 175/238 (74%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||||||||| || || || | || || || |||| ||| | || ||||| | Sbjct 1583512 ACAATGCAAATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCT 1583453 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || ||||||||||| |||| |||| |||| || ||||| ||||| ||||| || Sbjct 1583452 TCCGACACTATCGAAAATGTCA---AAGCTAAAATCCAA-GACAAGGAAGGTATTCCTCC 1583397 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 |||||||| || | || |||||||| |||||||||||||||| |||||| | || Sbjct 1583396 AGACCAACAACGTCTCATCTTTGCCGGGAAACAATTAGAAGATGGCCGCACTCTTTCAGA 1583337 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 || || || || ||||||||||| || || | || | || || |||||||| ||| Sbjct 1583336 CTATAACATCCAGAAAGAATCCACACTTCACCTGGTTTTGAGACTTAGAGGAGGTAAT 1583279 >seq5054 Length=501 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| ||| | || || || | ||||| | || || || | || Sbjct 208 ATGCAGATCTTTGTAAAAACTCTAACTGGCAAGACAATCACCCTTGAGGTTGAAGCTTCA 267 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| ||||||||| || ||||| ||||| ||||| || || Sbjct 268 GATACAATTGAAAATGTCA---AAGCAAAAATCCAG-GACAAGGAAGGCATTCCTCCAGA 323 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| | | || || || ||||| ||||| ||||||| ||||| | || || Sbjct 324 CCAACAGAGACTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGACTA 383 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| |||||||| || || || ||||| ||| | || ||||||| Sbjct 384 CAATATTCAGAAAGAATCTACCCTGCACTTAGTACTACGTCTTCGAGGAGG 434 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGC 25080 |||| || || | || || | ||||| ||| | || || || || ||| |||| Sbjct 3 TGACTGGCAAGACAATTACTCTTGAAGTCGAGCCCTCAGATACAATTGAGAATGTGAAAG 62 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 |||||| ||||| |||||||| || || || || ||||| | || |||||||||| Sbjct 63 CCAAAATCCAAGACAAGGAAGGGAT-CCTCCAGATCAGCAGCGTCTCATCTTTGCCGGCA 121 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 |||| || || |||| ||||| || || ||||| || || ||||| || || || | Sbjct 122 AACAGTTGGAGGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTACTCTGC 181 Query 25201 ATTTAGTGCT 25210 ||||||| || Sbjct 182 ATTTAGTACT 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433098463856345