Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq483 192 7e-44 seq742 136 4e-27 seq445 134 2e-26 seq433 129 7e-25 seq417 120 3e-22 seq2078 86.0 7e-12 >seq483 Length=1310704 Score = 192 bits (212), Expect = 7e-44 Identities = 185/235 (79%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 93346 CTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATT 93405 ||| | || ||||| ||||| ||||| || | ||| ||||||||||||||||| ||||| Sbjct 166390 CTCCTTCGGATCTCTGATGTAGGTATCTATAAGCAGGGAATACATTTCAGAATGAACATT 166331 Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||||| || || ||||| || ||||||||||| || || |||| || |||||||| || Sbjct 166330 TTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCCTCAGTGACTTGAACTTCTTGTGA 166271 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 ||||||||| || | |||||||| || || ||||| || || ||||| ||||| | | Sbjct 166270 AAATCTCTCAACCAAGTTTTCATTTACAATGCCATCTGAAGCCGCAAAGAAAGCAAGGAC 166211 Query 93526 ATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCCCAATCGGATAGATC 93579 |||||| || |||||| ||||| ||| |||||| || ||||| || |||| ||| Sbjct 166210 ATGCTTGATGAAATGTCTCTCACTATCTTTTAAGGTT-TCCCAGTCTGATAAATC 166157 Score = 129 bits (142), Expect = 7e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 ||||| |||||||| | || || | || || || || |||||||| || || |||||| Sbjct 173472 TCATTACTGAATGTAAGTCCCGGCATAAGGCCCCGCTTTTTGAGCCAGAAGATGGAAGCA 173413 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 ||||| || || ||||| || ||||| || |||||||| || ||||| | ||| |||| Sbjct 173412 AAACTGCCTGAGAAAAAGATTCCTTCTACAGCTGCAAAGGCAACAATCCTTTCACCAAAT 173353 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 |||| | || || ||||| | || ||||||||| ||||| ||||| | ||| || Sbjct 173352 GTTGCAGTCTTGCTTGCAATCCACTGTAGAGCCCAATCTGCTTTCTTCTTTACACAGGGA 173293 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 || || || | || ||||| || |||||| Sbjct 173292 AGAGTCTCAACCGCATTAAACAGAAAATCTC 173262 Score = 118 bits (130), Expect = 1e-21 Identities = 126/163 (77%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 ||||| |||||||||||||| || ||||||||||| |||| ||| ||||| ||| Sbjct 174328 TAGAAGTCTGCATCTAGTGTGAACACATTGTCAAGGCGATTGGC---CATCACACCGCAT 174272 Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||||||||| |||||||| || ||||| || |||||||| ||||||| ||||| | Sbjct 174271 TTTTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTTACCTTCCAGCGATATTAGA 174212 Query 92863 TTCA-CTAGT-GATTGGATTCTTGGCGTTATAATACTTTTCAC 92903 |||| ||| || || ||||| | ||| |||| || || || Sbjct 174211 TTCATGAAGTCGAAGGGGTTCTTTGTGTTGTAATGCTGTTGAC 174169 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || | ||||||||| ||||| ||||||||||| ||||| ||||| |||||||| | | Sbjct 165988 TTGGACAAATCGACTTCCTCGACGGTCCAAAACGAAGCTTCAGCTTTCTTGTACATTTGC 165929 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 ||||| || | |||||||| || || |||||||| || ||||| || || | Sbjct 165928 CATATATCGGGGTATTGAATAGGGAAGATGACAAAGCGCCGCGGGTTCTCCCGCAGCAGA 165869 Query 93701 GGCTCTAGTTGTGGGTCAAAC 93721 || || ||||||||| ||| Sbjct 165868 GGTTCCTTTTGTGGGTCGAAC 165848 Score = 82.4 bits (90), Expect = 8e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 92896 CTTTTCACCGATCAACTCGTACAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACA 92954 |||||| || || | || |||| ||||||||| || ||||| |||||||||||||||| Sbjct 173999 CTTTTCTCCAATTAGATCA-ACAAGTAATCTATCTGCAACAAACTCTATGTACTGAGACA 173941 Query 92955 TCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCT 93014 | | || || ||||| || || || | |||||| || || || || | || |||| | Sbjct 173940 TTAGTTCGCAGTTCATACCGAGCAGTCTTACAGGGAGCGCATCTGTGAGAAACTCTTGTT 173881 Query 93015 CGATTACAACGGCTTCTTT 93033 | || || || || ||||| Sbjct 173880 CAATGACTACTGCATCTTT 173862 >seq742 Length=11281751 Score = 136 bits (150), Expect = 4e-27 Identities = 95/106 (90%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 5394851 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 5394910 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||||||||||||||||||| | || ||| | ||||| || Sbjct 5394911 TGGGTTCGAACCCCACACCTGACAAA-TCTTTTTGTATTTTTTTTT 5394955 Score = 132 bits (146), Expect = 5e-26 Identities = 92/102 (90%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 4248612 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 4248671 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||||||||||||||||||||||||||| | | ||| | |||| Sbjct 4248672 TGGGTTCGAACCCCACACCTGACAAATGACT-TTGTATTTTT 4248712 >seq445 Length=2158332 Score = 134 bits (148), Expect = 2e-26 Identities = 87/93 (94%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 1211827 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1211886 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA-TTATT 126354 ||||||||||||||||||||||||||| ||||| Sbjct 1211887 GTGGGTTCGAACCCCACACCTGACAAACTTATT 1211919 >seq433 Length=2786897 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1970498 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 1970439 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 1970438 TGGGTTCGAACCCCACACCTGACAA 1970414 >seq417 Length=4373199 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||||||||||||||||| | |||||| || ||||||| | ||||||| Sbjct 371433 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCGGGTTTAAGTTCCGGTTCCCGATAGGGAGCG 371492 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 371493 TGGGTTCGAACCCCACACCTGACAA 371517 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||||||||||||||||| | |||||| || ||||||| | ||||||| Sbjct 373016 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCGGGTTTAAGTTCCGGTTCCCGATAGGGAGCG 373075 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 373076 TGGGTTCGAACCCCACACCTGACAA 373100 >seq2078 Length=268 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||||||||||||||||| | |||||| || ||||||| | ||||||| Sbjct 161 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCGGGTTTAAGTTCCGGTTCCCGATAGGGAGCG 220 Query 126324 TGGGTT 126329 |||||| Sbjct 221 TGGGTT 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556558264488120