Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq472 152 4e-32 seq747 109 4e-19 seq5054 98.7 7e-16 >seq472 Length=1464009 Score = 152 bits (168), Expect = 4e-32 Identities = 563/876 (64%), Gaps = 17/876 (2%) Strand=Plus/Minus Query 83856 CCGGTCCAACCGCGGCCGTACATGGCAACGCCAATAATTATTTTGTTGGGATCAACACCC 83915 || |||||||| || |||||||| ||||| || | || | || ||||| | ||||| Sbjct 408211 CCAGTCCAACCACGTCCGTACATAGCAACACCGACAACCAGCTTTTTGGGCTGGACACCT 408152 Query 83916 TGTTTAAGTAGCACACTGACAGCGTGATGTGTGGTGTATAACTCTTCCGAGTTCCAACTC 83975 || | || || |||| | || | |||||||| || | | ||||| Sbjct 408151 TGGGTCAGCAGGTACCTGATACCGAAGTCGGTGGTGTAAGTTTCCTTAGGACTCCAAGAT 408092 Query 83976 GGCGCGTAAATTGTGGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCACCTTTAAAATCA 84035 || || || | | || |||| |||| | ||| ||||| ||||| || || || Sbjct 408091 GGAGCATATAGAGCAGTCTGGTGTCCCAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCG 408032 Query 84036 TAATTCATTAAAAATATTTTTCCTAAAGACTTTTGCGCCTCGTCATAGTTTACCACGGCA 84095 ||| |||| | || || | | | | || || || || | ||||| || || Sbjct 408031 TAACTCATAACGAAGATATGGTCCATGTATTTCTGGGCTTCCTTGTAGTTCACGACTTGG 407972 Query 84096 ATCTTGTCGTAACCCGCACTAATAGCGCTTGTTAATTCGTAAACCCTGCCAGTTTGCGAT 84155 |||||||| |||| || || || || || || |||||| || ||||| | | Sbjct 407971 ATCTTGTCCCAACCGGCGCTGATGGCAGAGGTCAACTCGTAAGTTCTACCAGTCTCAGCC 407912 Query 84156 TCTAGCTCGTCTAACATTGCGCGCAGTTCCTCTAATATTAAAATGTATGTTTTGGCGTCA 84215 | ||||| || |||||| || | ||||| | | || |||| | |||| Sbjct 407911 GCCAGCTCATCCAACATTTGACGTAATTCCTTCATGAGCTGAACGTATACATCTCCGTC- 407853 Query 84216 CGTTCAGCATCCCCCAACGACGGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATG 84275 || || | || | ||||| || |||||||| || || || |||||||| ||| Sbjct 407852 --TTTAGGACTACCGAGATCAGGGTTAGCGCCTTTGCCACCTGGGAACTCCCAATCAATG 407795 Query 84276 TCTACACCGTCGAAAAATTTCCATACTTGTAAAAACTCCTTAACCGAATTTACAAAA--- 84332 || ||||| ||||| || ||||| ||| | || || || || || || ||| Sbjct 407794 TCGACACCATCGAAGAACTTCCAAGTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACGA 407735 Query 84333 --ACGTTTCTTTTT-TCAACATTGTGCATGAAATAAAACGGGTCCGACAACGTCCATCCT 84389 ||| || |||| || ||| | ||| | || || || | ||| ||||| || Sbjct 407734 TCACGCTTGGTTTTGTCG-----GTGAA-GAAGAAGAAGGGATCGGCCAATGTCCAGCCA 407681 Query 84390 CCTATGGACGGAAGAATCTTTAGGTGCGGGTTCGCCAATTT-AGCTGCCATCAATTGTCC 84448 || || || || | | ||||| | | ||||| ||| | |||| |||| || || Sbjct 407680 CCAATTGAAGGTAAGACCTTTAAGCCAGTATTCGCTTGTTTCAACTGC-ATCAGCTGCCC 407622 Query 84449 AAAATTGCCTTTATACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGC 84508 || || ||||| || || |||||||| | || | |||||||| || || || | ||| Sbjct 407621 GAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAATCCCTTTTGAGGTTTCTGCAGGGC 407562 Query 84509 GGCCCACGGATCGTGGATGGCAATTTTAAAATCCGCACGTCCCCTGCACGATCGTTGCAG 84568 ||||| ||||||||||| | || || || || |||| || ||||| || ||||| || Sbjct 407561 CGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCACGGCCGCTGCATGAACGTTGTAG 407502 Query 84569 AGATTCGAAACTACCGGGTATCACTTTGAGAGCATCGTTTATTCCATTACCGCCGCAAAT 84628 | || ||||| || || |||| | | || || || |||| ||| || ||||| Sbjct 407501 TGCTTGAAAACTGCCCTCAATTTCTTTCAAACTGTCATTGATGCCATCACCACCACAAAT 407442 Query 84629 GGGTATGAAACCGTACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAA 84688 || ||||| ||||| | ||| || | | || || | ||||| ||| || || || Sbjct 407441 CGGAATGAAGCCGTAGAGCAAATGAGTCAGGTTCGGAACCGGAACGCGGTCCACAGGGAA 407382 Query 84689 ATTGCGCCCGTACACTCCCCATTCAACAAAATACGC 84724 || | ||||| |||||||| || || || || Sbjct 407381 CTTTCTAGGATACACACCCCATTCGACGAAGTAAGC 407346 >seq747 Length=8313734 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || || |||||||| || | ||| ||||| | Sbjct 5399720 ATGCAGATTTTTGTAAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCATCC 5399661 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||||| || |||||||| | ||| | | || Sbjct 5399660 GACACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAG 5399601 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| |||| || || ||||| |||||||| ||||| | || | ||||||||||| Sbjct 5399600 CAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGGACATTATCCGATTACAAT 5399541 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || ||||||||||| ||| ||||||||||| | |||| ||| Sbjct 5399540 ATTCAAAAAGAATCTACTCTCCATTTGGTATTACGTCTGAGAGGTGGA 5399493 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||| | || |||||||||||||| || || ||||| | || || | || ||| Sbjct 4903561 CAACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTAC 4903620 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| ||||||||||| || ||| | || |||||| ||||||||||| Sbjct 4903621 AATATTCAAAAGGAATCTACACTCCATTTAGTGTTACGTCTACGAGGAGGA 4903671 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || || |||||||| || | ||| ||||| | Sbjct 5398124 ATGCAAATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAAGCATCT 5398065 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || || ||| || |||||||| | || | | || Sbjct 5398064 GACACCATAGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCAG 5398005 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 ||| || | |||||||| |||||||| || |||||| | | | ||| | || |||| Sbjct 5398004 CAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTAT--CTGACTACA 5397947 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 | || ||||| ||||||||||| ||| |||| |||||| | |||| ||| Sbjct 5397946 ACATCCAGAAAGAATCTACTCTGCATTTGGTGTTACGTCTCAGAGGTGGA 5397897 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || || |||||||| || | ||| ||||| | Sbjct 5398580 ATGCAAATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAAGCATCT 5398521 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || || ||| || |||||||| | || | | || Sbjct 5398520 GACACCATAGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCAG 5398461 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 ||| || | |||||||| |||||||| || |||||| | | | ||| | || |||| Sbjct 5398460 CAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTAT--CTGACTACA 5398403 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 | || ||||| ||||||||||| ||| |||| |||||| | |||| ||| Sbjct 5398402 ACATCCAGAAAGAATCTACTCTGCATTTGGTGTTACGTCTCAGAGGTGGA 5398353 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || || |||||||| || | ||| ||||| | Sbjct 5397668 ATGCAAATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAAGCATCT 5397609 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || || ||| || |||||||| | || | | || Sbjct 5397608 GACACCATAGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCAG 5397549 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 ||| || | |||||||| |||||||| || |||||| | | | ||| | || |||| Sbjct 5397548 CAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTAT--CTGACTACA 5397491 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | || ||||| ||||||||||| ||| |||| |||||| | |||| || Sbjct 5397490 ACATCCAGAAAGAATCTACTCTGCATTTGGTGTTACGTCTCAGAGGTGG 5397442 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | |||||| | || || |||||||| || | ||| ||||| | Sbjct 5399036 ATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAAGCATCT 5398977 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || || ||| || |||||||| | || | | || Sbjct 5398976 GACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCAG 5398917 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 ||| || | |||||||| |||||||| || |||||| | | | ||| | || |||| Sbjct 5398916 CAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTAT--CTGACTACA 5398859 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 | || ||||| ||||||||||| ||| |||| |||||| | |||| ||| Sbjct 5398858 ACATCCAGAAAGAATCTACTCTGCATTTGGTGTTACGTCTCAGAGGTGGA 5398809 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | |||||| | || || |||||||| || | ||| ||||| | Sbjct 5399493 AATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAAGCATC 5399434 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || || ||| || |||||||| | || | | || Sbjct 5399433 TGACACCATTGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 5399374 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || | |||||||| |||||||| || |||||| || | | || ||||| Sbjct 5399373 GCAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGCCGTACATTATCTGACTACAA 5399314 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||||||||| ||| |||| |||||| | |||| || Sbjct 5399313 CATCCAGAAAGAATCTACTCTGCATTTGGTGTTACGTCTCAGAGGTGG 5399266 >seq5054 Length=501 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| |||| ||||| || || ||| | || ||||| || Sbjct 208 ATGCAGATCTTTGTAAAAACTCTAACTGGCAAGACAATCACCCTTGAGGTTGAAGCTTCA 267 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || || || || | ||| | ||||| Sbjct 268 GATACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAGGAAGGCATTCCTCCAGACCAA 327 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| |||||||| ||| | |||||| || | | || |||||| Sbjct 328 CAGAGACTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGACTACAAT 387 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| |||||||| || || | ||| ||||| | |||||||| Sbjct 388 ATTCAGAAAGAATCTACCCTGCACTTAGTACTACGTCTTCGAGGAGG 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357935099390902